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Name : ECOK1_3363 (ECOK1_3363) Accession : YP_006102478.1 Strain : Escherichia coli IHE3034 Genome accession: NC_017628 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : - COG ID : - EC number : - Position : 3446901 - 3448928 bp Length : 2028 bp Strand : + Note : identified by match to protein family HMM PF05159 DNA sequence : ATGATTGGCATTTACTCGCCTGGCATCTGGCGTATTCCGCATCTGGAGAAATTTCTGGCGCAACCGTGCCAGAAACTTTC TCTGCTGCGCCCTGTTCCGCAAGAAGTTAATGCTATCGCCGTGTGGGGACATCGTCCCAGCGCGGCGAAACCAGTCGCCA TCGCCAAAGCAGCGGGAAAACCCGTCATTCGTCTGGAAGATGGATTTGTGCGTTCGCTGGATCTTGGCGTCAATGGCGAG CCGCCGCTTTCTCTGGTGGTGGATGATTGTGGCATTTACTACGATGCCAGCAAGCCTTCGGCGCTGGAGAAACTGGTACA GGATAAAGCCGGAAATACAGCTCTGATAAGCCAGGCCAGAGAAGCGATGCACACCATCGTGACCGGGGATATGTCGAAAT ATAATCTGGCGCCTGCGTTTGTGGCTGATGAGTCAGAACGTACAAACATCGTTCTGGTTGTCGATCAGACATTTAATGAT ATGTCAGTGACGTATGGCAATGCTGGCCCGCATGAGTTTGCTGCCATGCTGGAAGCCGCGATGGCGGAAAATCCTCAAGC CGAAATTTGGGTGAAGGTGCACCCAGATGTACTGGAAGGAAAGAAAACAGGTTATTTCGCCGATCTGCGCGCCACGCAAC GAGTACGTTTAATTGCCGAGAATGTCAGCCCGCAGTCGCTGTTGCGACACGTTTCCCGGGTTTACGTCGTGACCTCCCAA TACGGCTTTGAAGCCTTGCTGGCAGGAAAACCAGTAACATGTTTCGGCCAGCCCTGGTATGCAAGCTGGGGCTTAACCGA CGATCGCCATCCGCAGTCCGCTTTGTTATCTGCCCGACGCGGTTCTGCCACGCTGGAGGAACTTTTTGCCGCTGCATACC TGCGTTACTGTCGCTATATCGATCCGCAAACGGGAGAAGTAAGCGATCTATTTACCGTGCTGCAATGGCTGCAATTACAA CGTCGACATCTGCAACAGCGTAATGGTTATTTATGGGCGCCAGGCTTAACGCTGTGGAAGTCGGCGATCCTGAAACCCTT CTTACGAACGCCAACAAACCGGCTGAGTTTTTCACGTCGCTGTACTGCGGCGAGCGCCTGCGTGGTATGGGGTGTAAAGG GGGAACAGCAATGGCGAGCCGAAGCGCAGCGAAAATCACTGCCATTATGGCGAATGGAAGATGGTTTTCTGCGTTCATCC GGACTTGGCTCTGACCTGCTGCCGCCGCTATCGTTGGTACTGGATAAACGCGGGATCTACTATGACGCCACGCGCCCCAG CGACCTGGAAGTGCTGCTTAATCATAGCCAGCTAACGCTGGCGCAGCAGATGCGAGCTGAAAAATTACGCCAGCGACTGG TTGAAAGTAAACTGAGCAAGTACAACCTGGGAGCCGATTTCTCTCTACCAGCCAAAGCCAAAGATAAAAAAGTTATCCTG GTGCCGGGTCAGGTAGAGGACGATGCCTCTATTAAAACAGGCACAGTCTCGATTAAGAGCAACCTTGAGTTATTACGCAC AGTACGCGAGCGTAATCCGCACGCCTACATTGTTTATAAACCGCACCCGGATGTACTGGTGGGGAATCGCAAGGGCGATA TTCCGGCAGAACTGACTGCTGAACTCGCTGATTATCAGGCACTGGACGCCGATATTATTCAATGCATTCAGCGCGCAGAT GAAGTGCATACCATGACGTCGCTGTCGGGGTTTGAAGCGTTATTACATGGCAAGCACGTACATTGTTACGGCCTGCCCTT CTATGCCGGTTGGGGTTTAACCGTCGATGAACATCGTTGCCCGCGTCGCGAGCGAAAATTAACGTTAGCGGATTTGATCT ATCAGGCGCTGATTGTTTATCCAACCTATATCCACCCAACACGGCTACAACCTATTACGGTTGAAGAGGCGGCGGAATAT TTGATCCAGACACCGCGCAAGCCGATGTTTATTACCCGAAAAAAAGCGGGGCGAGTAATACGTTATTACCGCAAATTAAT TATGTTCTGTAAGGTCAGATTTGGCTAA Protein sequence : MIGIYSPGIWRIPHLEKFLAQPCQKLSLLRPVPQEVNAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE PPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQAREAMHTIVTGDMSKYNLAPAFVADESERTNIVLVVDQTFND MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSRVYVVTSQ YGFEALLAGKPVTCFGQPWYASWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDPQTGEVSDLFTVLQWLQLQ RRHLQQRNGYLWAPGLTLWKSAILKPFLRTPTNRLSFSRRCTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSS GLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAKAKDKKVIL VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIVYKPHPDVLVGNRKGDIPAELTAELADYQALDADIIQCIQRAD EVHTMTSLSGFEALLHGKHVHCYGLPFYAGWGLTVDEHRCPRRERKLTLADLIYQALIVYPTYIHPTRLQPITVEEAAEY LIQTPRKPMFITRKKAGRVIRYYRKLIMFCKVRFG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 0.0 | 100 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 100 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 2e-127 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECOK1_3363 | YP_006102478.1 | capsular polysaccharide biosynthesis protein | VFG0259 | Protein | 9e-128 | 50 |
| ECOK1_3363 | YP_006102478.1 | capsular polysaccharide biosynthesis protein | VFG0692 | Protein | 2e-118 | 47 |
| ECOK1_3363 | YP_006102478.1 | capsular polysaccharide biosynthesis protein | VFG0704 | Protein | 6e-106 | 47 |
