Gene Information

Name : kdsB (ECOK1_3362)
Accession : YP_006102477.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.38
Position : 3446164 - 3446904 bp
Length : 741 bp
Strand : +
Note : identified by similarity to SP:P42216; match to protein family HMM PF02348; match to protein family HMM TIGR00466

DNA sequence :
ATGAGCAAAGCAGTTATTGTCATTCCGGCTCGTTATGGCTCATCGCGCCTGCCGGGTAAGCCACTGCTCGATATTGTTGG
TAAACCGATGATCCAGCATGTTTACGAGCGTGCGTTACAGGTGGCGGGCGTTGCGGAAGTTTGGGTGGCAACAGACGATC
AGCGTGTTGAAAAGGCCGTGCAGGCATTTGGCGGGAAAGCCATCATGACGCGCAACGATCATGAATCCGGCACCGATCGG
CTGGTCGAGGTGATGCATAAAGTCGAGGCAGATATCTACATTAACCTGCAGGGCGACGAACCAATGATTCGCCCGCGGGA
TGTAGATACGCTGTTACAAGGAATGCGTGATGACCCCGCGTTGCCAGTGGCAACGCTATGCCACGCGATTTCTGCCGAAG
AAGCGACCGAGCCAAGCACGGTAAAAGTGGTGGTAAATACCCACCAGGATGCGCTTTATTTCAGCCGTTCGCCTATTCCG
TATCCGCGAAATGCTGAAAAAGCGCGCTACCTGAAACACGTCGGTATTTACGCTTATCGTCGCGATGTGCTGCAAAACTA
CAGCCAGTTACCAGAGTCCATGCCAGAGCAGGCAGAATCACTGGAGCAGCTGCGGTTGATGAGCGCAGGGATCAACATCC
GCACATTTGAGGTTGCCGCAACCGGTCCGGGCGTCGACACCCCAGCATGCCTGGAAAAAGTGCGCGCCCTGATGGCACAG
GAACTGGCTGAAAACGCATGA

Protein sequence :
MSKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDQRVEKAVQAFGGKAIMTRNDHESGTDR
LVEVMHKVEADIYINLQGDEPMIRPRDVDTLLQGMRDDPALPVATLCHAISAEEATEPSTVKVVVNTHQDALYFSRSPIP
YPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMSAGINIRTFEVAATGPGVDTPACLEKVRALMAQ
ELAENA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 7e-115 100
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 5e-115 100
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 1e-112 98