Gene Information

Name : ECOK1_2168 (ECOK1_2168)
Accession : YP_006101333.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Unknown
Product : integrase/recombinase, phage integrase family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2192276 - 2193547 bp
Length : 1272 bp
Strand : +
Note : identified by match to protein family HMM PF00589

DNA sequence : 
ATGTCCCTTAACGACGCAAAAATCCGTAGTCTCAAGCCCACTGATAAACCCTTTAAAGTCTCCGATTCCCACGGTCTGTA
TCTGCTGGTCAAACCAGGCGGTTCCCGTCTCTGGTATCTTAAATACCGTATTAATGGCAAAGAATCCCGTATTGCACTGG
GTGCCTACCCTGCCGTCTCCCTGTCTGACGCCCGCCAGCAGCGCGAAGGCATCCGTAAGATGCTGGCGCTGAACATCAAC
CCGGCGCAGCAACGTGCCGCTGAACGCGGCTCGCGCATGCAGGAGAAAATGTTTAAATCCGTGGCACTGGAGTGGCACAG
TAGCAAGAAAAAATGGTCGCAGAATACCGCAGATCGCGTGCTTGCCCGTCTGAACAGACATGTCTTTCCGACCATCGGGC
ATCTACCAGTTACCGAGCTTAAATCACGTCATTTCATTGAATTACTGAAAGGCATTGAGGAAAAGGGCTTGCTTGAAGTT
GCGTCCCGCTCGCGGCAACACCTCAGCAACATTATGCGTTATGCTGTTCATCAGGGGTTAATCGAAATCAACCCAGCTGC
AAATCTTGACGGCGTGACGGCTTCTCCCGCCAGACGACATTATCCCACCCTGCCACTGGAGCGCCTTCCTGAGCTGCTTG
AACGGATTGACAGTTATCACCAAGGACGGGAACTCACCAGGCTTGCAGTCCTGCTGACGTTGCATGTGTTCATTCGCTCA
AGTGAACTGCGCTATGCTCGTTGGACAGAGATTAACTTCAGAAATCGGATCTGGACGATACCTGCCACACGCGAAGCGAT
TGCAGGCGTACGTTATTCCAGTCGAGGTGCCAAAATGCGTACACCGCATATTGTGCCCCTTTCTGAGCAGGTTATCTCTA
TTCTGAAAAGGATTAAGGAAATATCTGGCGGGTATGAACTGGTGTTCCCCGGCTATCATGACCCCTACAAGCCGATGAGT
GAAAATACTATCAATAAGGCACTTCGCCAGATGGGATACAACACGAAACAAGATATCTGCGGTCATGGTTTCCGGGCAAT
GGCGTGTAGCGCGCTGATGGAATCCGGTTTATGGTCGCAAGATGCAGTGGAGCGTCAGATGAGTCACCAAGAGCGCAACA
CTGTGCGTCTGGCTTACATTCATAAGGCCGAACATATGGAAGCCCGCATGGACATGATGCAGTGGTGGTCGGATTATCTG
GATATGTGCAGTGAAATCTGGGTGCCCCCGTACATCTGGAGTCAGCAAAACATTAATCTCGCAGTAACCTGA

Protein sequence : 
MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVSLSDARQQREGIRKMLALNIN
PAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRVLARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEV
ASRSRQHLSNIMRYAVHQGLIEINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVFIRS
SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKEISGGYELVFPGYHDPYKPMS
ENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYL
DMCSEIWVPPYIWSQQNINLAVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAB59974.1 integrase Not tested HPI Protein 5e-157 82
int YP_002346908.1 integrase Not tested HPI Protein 8e-156 82
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 8e-156 82
int2 NP_993013.1 integrase Not tested HPI Protein 8e-156 82
int CAA21384.1 - Not tested HPI Protein 8e-156 82
int CAA08754.1 integrase Not tested HPI Protein 3e-156 82
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-152 81
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-113 80
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-121 80
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-115 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-115 59
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-112 57
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-112 57
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-105 56
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-105 56
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-105 56
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-105 56
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-105 56
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-105 56
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-105 56
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-104 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-104 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-104 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-104 55
int AAK00456.1 Int Not tested SHI-1 Protein 6e-97 55
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 5e-100 55
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-104 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-105 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-104 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-103 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-104 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 7e-104 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-105 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-105 55
int CAC81896.1 integrase Not tested LEE II Protein 8e-97 55
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 3e-90 50
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-92 48
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-61 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECOK1_2168 YP_006101333.1 integrase/recombinase, phage integrase family VFG0626 Protein 1e-105 56
ECOK1_2168 YP_006101333.1 integrase/recombinase, phage integrase family VFG1536 Protein 3e-100 55
ECOK1_2168 YP_006101333.1 integrase/recombinase, phage integrase family VFG1693 Protein 3e-104 55