Gene Information

Name : ECOK1_2082 (ECOK1_2082)
Accession : YP_006101262.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Virulence
Product : heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2100420 - 2101202 bp
Length : 783 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGAGTTTTGAGGATAGCGAAAAAACGTCCAGGGTAACCTTACAGCAGCATTACAATTTTGTAATGAACCAGGCTGTTTC
TATAACATATGATTTATGGCATATTATTTTCATGAAGATTCTACTTATTGAAGATAATCAAAGGACCCAGGAATGGGTAA
CGCAGGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCAGATGGCAGAGATGGGCTTTATCTTGCGCTGAAGGAT
GATTATGCATTGATCATTCTGGATATTATGCTTCCGGGTATGGATGGCTGGCAGATCTTACAAACGTTAAGAACAGCAAA
GCAAACCCCTGTTATTTGCCTTACTGCAAGGGATTCTGTCGATGACAGAGTCAGAGGGCTGGACAGTGGGGCAAATGATT
ATCTGGTAAAACCTTTTTCATTTTCTGAGTTGCTGGCAAGGGTTCGGGCACAATTAAGGCAACATCACGCTCTGAATTCA
TCATTAGAAATCAGCGGCTTAAGAATGGACTCTGTCAGTCAAAGTGTGAGCAGGGACAATATCAGTATTACACTGACGCG
CAAGGAGTTTCAGTTACTTTGGCTACTGGCCTCCAGAGCTGGCGAGATTATCCCCAGAACGGTTATTGCGAGTGAAATTT
GGGGAATCAACTTTGATAGTGATACCAATACGGTGGACGTCGCCATTCGCAGGCTCCGCGCAAAAGTTGATGATCCTTTT
CCTGAAAAGCTAATCTCCACAATCCGGGGGATGGGCTATTCATTCGTAGCGGTAAAAAAATAA

Protein sequence : 
MSFEDSEKTSRVTLQQHYNFVMNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD
DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNS
SLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPF
PEKLISTIRGMGYSFVAVKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-80 77
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-82 74

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0125 Protein 1e-58 57
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0197 Protein 7e-56 55
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0083 Protein 3e-54 54
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0111 Protein 2e-55 52
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0308 Protein 7e-52 52
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0638 Protein 8e-49 52
ECOK1_2082 YP_006101262.1 heavy metal response regulator BAC0347 Protein 8e-50 49
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_010079.5776364.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_002952.2859858.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_007622.3794948.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator AE015929.1.gene1106. Protein 6e-33 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_003923.1003417.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_013450.8614146.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_002951.3238224.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_007793.3914065.p0 Protein 6e-38 42
ECOK1_2082 YP_006101262.1 heavy metal response regulator NC_002758.1121390.p0 Protein 6e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECOK1_2082 YP_006101262.1 heavy metal response regulator VFG0596 Protein 6e-81 77