Gene Information

Name : focC (ECOK1_1100)
Accession : YP_006100308.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Virulence
Product : fimbrial chaperone FocC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1143643 - 1144338 bp
Length : 696 bp
Strand : +
Note : identified by similarity to SP:P62609; match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGATGAAGCACATGCGTATATGGGCCGTTCTGGCATCATTTTTAGTCTTTTTTTATATTCCGCAGAGCTATGCCGGGGT
TGCTCTGGGTGCCACCCGTGTGATTTACCCTGAAGGGCAAAAACAGGTACAACTGGCGGTAACAAATAATGATGATAAAA
GTAGTTACCTTATTCAATCATGGATTGAAAATGTTGAAGGAAAAAAGGATGCCAGGTTTGTAATTACTCCTCCGTTATTT
TCCATGCAGGGAAAGAAAGAGAATACCCTGAGAATTATTGATGCCACAAACGGACAGATGCCGGAAGACAGGGAAAGTTT
GTTCTGGGTGAATGTCAAGGCCATCCCGGCCATGGATAAGGCGAAAACCGGCGAGAATTATCTGCAGTTTGCAATTGTCA
GCAGAATTAAACTGCTCTACCGTCCACAGGGACTGGTTATTCCGCCAGAACAGGCACCAGGTAAATTAGAGTTCACCCGT
GAAAACGGAGGGCTGACTCTGTTTAATCCGACGCCGTATTATCTGACAGTGACTGACTTAAAGGCCGGAAATAAAAGTCT
TGAAAACACCATGGTACCCCCACAGGGAAAGGTCACTGTTAATATCCCTGGAGGATACACCGGAGGAGATATTACTTATA
AAACAATTAACGATTATGGTGCTCTGACTGAACAGGTGAGGGGTGTGGTGAAGTAA

Protein sequence : 
MMKHMRIWAVLASFLVFFYIPQSYAGVALGATRVIYPEGQKQVQLAVTNNDDKSSYLIQSWIENVEGKKDARFVITPPLF
SMQGKKENTLRIIDATNGQMPEDRESLFWVNVKAIPAMDKAKTGENYLQFAIVSRIKLLYRPQGLVIPPEQAPGKLEFTR
ENGGLTLFNPTPYYLTVTDLKAGNKSLENTMVPPQGKVTVNIPGGYTGGDITYKTINDYGALTEQVRGVVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-106 99
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 1e-69 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
focC YP_006100308.1 fimbrial chaperone FocC VFG0911 Protein 2e-106 99
focC YP_006100308.1 fimbrial chaperone FocC VFG1644 Protein 9e-107 99
focC YP_006100308.1 fimbrial chaperone FocC VFG0875 Protein 2e-70 65
focC YP_006100308.1 fimbrial chaperone FocC VFG0445 Protein 4e-48 50
focC YP_006100308.1 fimbrial chaperone FocC VFG0455 Protein 4e-38 41