Gene Information

Name : EC042_4789 (EC042_4789)
Accession : YP_006099035.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5133222 - 5134607 bp
Length : 1386 bp
Strand : -
Note : -

DNA sequence :
ATGAACGACATCTCTTCTGACGACATCTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAACTCCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGAGAGCGATACGCTG
ACTGTTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCCCTGAATCACTACC
CCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTATCTGGGCGAGGATA
CCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGC
GATACCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCT
GACCTCGAAGTATGCAGAGCACACCCCGCTGTATTGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGCCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTCATGACT
GACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACCGGGCGGTTGTG
GGCGTATGTTCGTGATGACCGCAATGCCGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACTCATCTTGCTTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTAT
CGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTCCGCATCCCGTC
AGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGC
AGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGCTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACC
CTGTTCTTCGGCTCTGGCCATGGTGGTGAGCGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGT
GGATCCAGAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGGTCAGCGAACTGCTTCCGT
GGCGCATAGCACTGCCAGCTGAATAA

Protein sequence :
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTL
TVRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
DTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFSGVLQADAYAGFNELY
RNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKT
LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 99
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 3e-161 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-162 99
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 97
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 97
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 97
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 97
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 97
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 96
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 96
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 96
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 96
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 95
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 95
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-122 75
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 8e-108 63
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 3e-100 59
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 1e-100 58
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-100 54
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 4e-100 54
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-102 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_4789 YP_006099035.1 transposase VFG1051 Protein 0.0 99
EC042_4789 YP_006099035.1 transposase VFG1516 Protein 2e-161 99
EC042_4789 YP_006099035.1 transposase VFG0793 Protein 0.0 97
EC042_4789 YP_006099035.1 transposase VFG1700 Protein 5e-123 75
EC042_4789 YP_006099035.1 transposase VFG1736 Protein 5e-111 64