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Name : EC042_4548 (EC042_4548) Accession : YP_006098825.1 Strain : Escherichia coli 042 Genome accession: NC_017626 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 4881858 - 4883645 bp Length : 1788 bp Strand : + Note : Note that the product of this CDS is similar to many proposed UvrD helicases. However, the level of similarity to the originally described UVRD_ECOLI helicase in low, but protein motif searches do appear to support this idea. DNA sequence : ATGGCGAAACTGATAAATGTATCGGCGTCCACTGAGGAGAGAATGACGCCCGGGGAGAGGAGGGTAGCTTCACGACTGGA GAGCTTTCTGAATGATGACTGCCTTGTCTGGTACGATATTCCGGTGGGACGGAAAAACCGGCATCCGGATTTTGTCATTA TTGACCCGGAGAACGGACTGGTATTTCTGGAGGTCAAGGACTGGACGGTTTCCACGCTGCGCCAGGTAAATCAGGAGCAG GTCACGCTGGAAACCGACGGTCTTCTGAAATCAGAAATCAATCCGCTGGTACAGGTTCGTCGTTATGCCTGTGATACGGT TAATGCCTTACCTGCAAACCCGTGCTTACGGCAGAATGACGGTCAGTATAAGGGACGGCTGAACCTGGCCTGGGCGTATG GTGTGGTGTTTACCCGCATTACCCGTCAGCAACTGAAGACACTGGCAGGGAATGATGAGAATGCGGTGGAAAAAATTTTT CCTTCAGCACAGACAATCTGCCAGGATGAAATGACGCAGTCTGTTTTACCTGAAGTATTCCGGCAAAAAATTGCCGGGAT GTTTACCACGGGATTCAGAACCCGGGTGACACCCCGGATGAGAGATATTCTGCGCGCCCATCTGTTTCCTGAAGTGACCG TGAAACAGAACTCACAAATCAAAATTATGGATATTCAGCAGGAGATTCTGGCCAGAAATATTGGTGACGGGCATCGTGTC ATTCATGGTGTGGCCGGTTCCGGAAAAACCATGATTCTTTTGTTCCGTTGCCTTTACCTGGCTGAAACCACACCCGGAAA GATTCTGGTGTTGTGCTACAACATTACCCTGGCCAGCTATCTGCGGGAATGCATTGAAGCCAGAGGGCTGGCGTCACGGG TTACGGTATCCCATTTTCACAGCTGGTGTGCCTCAATGGTAAAACGCCACGGTATTAAGGTGACGGCCGACAGAAAAGAA TATCCTGATAAATGCTTCAGTACACTGGAAGAGGCCGTGAACAGCGGAAAAATCACCCGAACCGGATATGATGCTGTACT GGTGGATGAGGGGCATGATTTTGACAGTCGCTGGCTGGCCCTGATTGCCCGTCTGTTTGATAACGCATCCCGTTCACTGC TCCTGATGTACGATGACGCCCAGTCCATTTACCGGCGGGAGCGGGCCCTGAACTTTTCTCTGGCCAGTGTGGGGATTCAG GCACAGGGACGCACTTCTGTCCTGCCGGTCAATTATCGTAATCCGAAACGCATTCTGCACTTTGCTTATGCATTCTCCCG CGAGTATTTTGAAAAACATCAGAACCGTGAAATACCGCTCGTTCAGCCACAGGCGGGCGGTGAAGAGGGTACAGAGCCGG AAATCCTGCGTTGTGCTTCTGAACGTGATGAAGCCAGACAAGTTGCAGACTGGCTGGAGAAGCGCCATGTCCTGTGTGGT CACTGGAGTGATATGGCTGTGCTGTGTCCGACAGAGCGTTCAGCGCAACAATTGCAGGACGTTATGACACTACGCGGGGT ACCTTTTGCCACCTGTTTTGACAGGGAAGGCAAGAAGACATACTCGCGACGTAAGGATGTGGTGCATTTACTGACGTACC AGAGCAGCAAGGGGCTGGAGTTCCCGTATGTGGCGGTTATCAATGCGTCTTTCGTGCACTCTGGTGCAGCGGATGAGTCT GAAGTGATTCCGGTGCTTTATGTGGCGTTCACCCGGGCAACCCGTGAATTACTGGTGACCTGTTACCGTGAAAACAGTAT CAGTCGCCACCTTGAGGATTTTGCATAA Protein sequence : MAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQ VTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIF PSAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKE YPDKCFSTLEEAVNSGKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQ AQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHVLCG HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADES EVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| S12 | AAQ19135.1 | putative UvrD/REP helicase | Not tested | PAI I CL3 | Protein | 0.0 | 99 |
| uvrD | ADD91733.1 | putative uvrD/REP helicase | Not tested | PAI-I AL862 | Protein | 0.0 | 96 |
