Gene Information

Name : EC042_4506 (EC042_4506)
Accession : YP_006098784.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : putative plasmid-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4834820 - 4835293 bp
Length : 474 bp
Strand : -
Note : no sys_id

DNA sequence :
ATGAAAACATTGTCTCAGAACACCACCTCTTCGGTCTCAGCACCGGAGACTGACCTGCAACAACTGGTTGCCAGCCTCGT
CCCTGATGAACAACGTATCAGTTTCTGGCCGCAGCACTTTGGCCTCATTCCACAGTGGGTGACCCTGGAGCCCCGTGTCT
TCGGCTGGATGGACCGTCTTTGCGAAAACTACTGCGGTGGTATCTGGAATCTGTACACCCTGAACAACGGCGGGGCATTT
ATGGCACCCGAACCGGATGACGATGATGGCGAAAACTGGGTACTGTTCAATGCCATGAACGGTAACCGCGCTGAAATGAG
CCCGGAAGCCGCCGGCATTGCCGCCTGTCTGATGACGTACAGTCATCATGCCTGTCGTACGGAGTGTTATGCCATGACGG
TCCATTATTACCGGCTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATCGATTGA

Protein sequence :
MKTLSQNTTSSVSAPETDLQQLVASLVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRLCENYCGGIWNLYTLNNGGAF
MAPEPDDDDGENWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S3200 NP_838483.1 hypothetical protein Not tested SHI-1 Protein 3e-64 97
SF2995 NP_708769.2 hypothetical protein Not tested SHI-1 Protein 3e-64 97
unnamed AAL67346.1 intergenic-region protein Not tested PAI II CFT073 Protein 6e-64 96
unnamed CAI43899.1 hypothetical protein Not tested LEE Protein 3e-64 95
yfjX YP_854322.1 hypothetical protein Not tested PAI I APEC-O1 Protein 5e-60 89
c5155 NP_757003.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-60 89
ORF_48 AAZ04457.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 4e-60 89
ECO103_3588 YP_003223445.1 hypothetical protein Not tested LEE Protein 1e-57 88
yfjX ADD91703.1 YfjX Not tested PAI-I AL862 Protein 3e-64 87
unnamed CAI43844.1 hypothetical protein Not tested LEE Protein 4e-65 87
unnamed CAD42097.1 hypothetical protein Not tested PAI II 536 Protein 2e-62 87
unnamed CAD66202.1 hypothetical protein Not tested PAI III 536 Protein 5e-63 87
Z1216 NP_286751.1 hypothetical protein Not tested TAI Protein 5e-59 86
Z1656 NP_287159.1 hypothetical protein Not tested TAI Protein 5e-59 86
aec72 AAW51755.1 Aec72 Not tested AGI-3 Protein 4e-63 86
yfjX CAE85200.1 YfjX protein Not tested PAI V 536 Protein 9e-59 86
z1216 CAD33786.1 Z1216 protein Not tested PAI I 536 Protein 1e-63 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_4506 YP_006098784.1 putative plasmid-like protein VFG0659 Protein 8e-65 97
EC042_4506 YP_006098784.1 putative plasmid-like protein VFG1616 Protein 7e-63 87
EC042_4506 YP_006098784.1 putative plasmid-like protein VFG1677 Protein 2e-63 87
EC042_4506 YP_006098784.1 putative plasmid-like protein VFG1527 Protein 5e-64 85