Gene Information

Name : EC042_3992 (EC042_3992)
Accession : YP_006098276.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4236863 - 4238044 bp
Length : 1182 bp
Strand : +
Note : -

DNA sequence :
ATGGCTCTCACCGATATACAGATCAAACGTGCAAAACCACAAGACAAGCCATACACATTGAACGATGGACAAGGTCTGTC
ATTGCTTATCAATCCCGATGGCTCGAAAGGCTGGCGTTTCCGTTTCCGGTTTGCAGGGAAAGCGCGGTTAATGTCATTTG
GCAGCTACGATTTAGTAAGCCTCGCAGAAGCACGTGAGAAGCGTGATATCGCCCGTAAGCAGGTTGCTAATGGCATTGAC
CCGGTAGAGGAACGCAAAGCTTTAAGACTCGCCCAAAAGCTATCAACAGAAAATTCTTTCGAAGCAATATGTCGAGAATG
GCATACCAACAAAGCTGACCGCTGGACTGTGGCCTATCGAGAAGAAATCATTAAGACATTCGAGCAAGATGTCTTCCCGT
TCATTGGTAAACGTCCTATCAGTGAAATCAAACCATTAGAACTGCTTGAAGTATTACGACGAATCGAAAAACGTGGAGCA
CTAGAGAAAACACGCAAGGTGCGTCAAAGATGCGGTGAGGTTTATCGCTATGCAATCATAACTGGCCGTGCTGAGTACAA
TCCTGCACCTGATTTAGCTATCGCTCTGGCCGTTCCCAAGCAAAAACACCATCCATTTTTATCCGCTGAAGAGTTGCCTC
ATTTTATTCGAGATCTTGAAGCGTATACCGGTAGCATCATCACCAAAAATGCTACGAAGATAGTCATGCTGACTGGTGTA
AGAACGCAGGAGATGCGCTTTGCTACGTGGGAAGAAGTAGACCTCGAAAAAGGTATATGGGAGATACCAGCGGAACGTAT
GAAAATGCGTAGACCTCACATTGTTCCTTTATCTACTCAGGTAGTTGACCTTTTCAAACAGCTCAAACCTATTACCGGCC
ATTACCCTTACATCTTTATTGGTAGGAATAACCGTAATAAACCAATCTCAAAAGAAAGTGTATCACAAGTAATTGAGTCA
CTCGGTTACAAAGGACGTGCTACCGGTCACGGTTTTAGACATACAATGTCGACAATTCTACATGAGCAGGGGTTTGATAG
TGCATGGATTGAGATGCAATTAGCACATGTGGACAAAAACAGTATTCGTGGGACATATAACCATGCCCAGTATCTGGAAG
GCAGAAAAAAAATGATGAATTGGTATGCTAATCATATCTTTAATATAGGGGTTCCTAAATGA

Protein sequence :
MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVSLAEAREKRDIARKQVANGID
PVEERKALRLAQKLSTENSFEAICREWHTNKADRWTVAYREEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGA
LEKTRKVRQRCGEVYRYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV
RTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPITGHYPYIFIGRNNRNKPISKESVSQVIES
LGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKNSIRGTYNHAQYLEGRKKMMNWYANHIFNIGVPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 2e-141 72
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-141 72
int AAD44730.1 Int Not tested SHI-2 Protein 2e-139 71
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-139 71
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-138 71
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-138 71
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-140 70
int ACU09430.1 integrase Not tested LEE Protein 3e-140 70
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-140 70
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-140 70
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-112 57
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-113 55
intA AAB00935.1 integrase A Not tested vap locus Protein 8e-61 42
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 1e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_3992 YP_006098276.1 integrase VFG0598 Protein 4e-139 71
EC042_3992 YP_006098276.1 integrase VFG0783 Protein 2e-140 70