Gene Information

Name : epaP (EC042_3064)
Accession : YP_006097359.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3264640 - 3265305 bp
Length : 666 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAAATAGCATTTCGCTGATAGCGATATTATCATTATTTACACTATTACCGTTTATAATAGCATCCGGGACATGTTT
TATTAAATTCTCGATTGTTTTTGTTATTGTCCGAAACGCACTGGGACTTCAGCAAGTGCCATCAAATATGACACTTAATG
GGATAGCTTTGCTATTGTCAATGTTCGTAATGATGCCGGTTGGGAAGGAAATATATAATAACAGTCAGAATGAGAATCTT
TCATTCAATAATGTAGCGTCGGTTGTTAATTTTGTTGAGACAGGCATGAGTGGTTATAAATCATATTTGATAAAATATTC
TGAACCGGAGTTGGTTAGCTTTTTTGAAAAGATTCAGAAGGTGAATAGTTCTGAAGATAATGAAGAGATAATCGATGATG
AGAATATTTCAATTTTCTCGTTACTCCCGGCATATGCGTTGAGTGAGATAAAAAGTGCATTTATTATAGGTTTCTATATC
TATTTACCCTTTGTTGTAGTTGATCTGGTTATATCCAGCGTTCTGTTAACGTTAGGTATGATGATGATGAGTCCGGTAAC
CATATCTACACCGATAAAATTAATTCTGTTTGTCGCGATGGACGGTTGGACAATGTTATCGAAAGGACTCATTTTACAAT
ATTTTGACCTATCCATTAATCCCTGA

Protein sequence : 
MSNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSMFVMMPVGKEIYNNSQNENL
SFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYI
YLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLSINP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 2e-63 99
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 2e-61 98
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-47 67
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-48 67
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-48 67
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-47 67
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 3e-47 60
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 1e-40 58
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-24 44
escR AAC31528.1 L0049 Virulence LEE Protein 4e-25 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-25 42
escR AAK26700.1 EscR Virulence LEE Protein 3e-25 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-25 42
escR AAL57527.1 EscR Virulence LEE Protein 3e-25 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-25 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-25 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-25 42
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-25 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-25 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-25 42
escR AAC38369.1 EscR Virulence LEE Protein 2e-24 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-22 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epaP YP_006097359.1 type III secretion system protein VFG0551 Protein 2e-48 67
epaP YP_006097359.1 type III secretion system protein VFG2455 Protein 9e-47 62
epaP YP_006097359.1 type III secretion system protein VFG1773 Protein 1e-47 62
epaP YP_006097359.1 type III secretion system protein VFG1012 Protein 6e-43 60
epaP YP_006097359.1 type III secretion system protein VFG0394 Protein 7e-26 46
epaP YP_006097359.1 type III secretion system protein VFG0188 Protein 4e-26 44
epaP YP_006097359.1 type III secretion system protein VFG0827 Protein 2e-25 42
epaP YP_006097359.1 type III secretion system protein VFG0715 Protein 8e-25 42