Gene Information

Name : EC042_3058 (EC042_3058)
Accession : YP_006097353.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3259922 - 3260161 bp
Length : 240 bp
Strand : -
Note : -

DNA sequence :
ATGGCAGATTGGAATGGTTATATTATGGATATCAGCAAACAATTTGATCAGGGCGTTGATGATCTGAACCAACAAGTTGA
AAAGGCGTTGGAGGATTTAGCAACCAATCCTTCCGACCCGAAATTCCTTGCCGAATATCAGAGTGCATTAGCTGAGTATA
CATTATATCGAAATGCGCAATCTAACGTTGTAAAAGCGTATAAAGATCTTGATTCGGCAATCATACAAAACTTCCGCTAA

Protein sequence :
MADWNGYIMDISKQFDQGVDDLNQQVEKALEDLATNPSDPKFLAEYQSALAEYTLYRNAQSNVVKAYKDLDSAIIQNFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3718 NP_311745.1 EprI Not tested LIM Protein 3e-30 100
prgI AAX49613.1 PrgI Virulence SPI-1 Protein 4e-20 63
prgI YP_217792.1 cell invasion protein Virulence SPI-1 Protein 5e-20 63
prgI NP_461794.1 needle complex major subunit Virulence SPI-1 Protein 5e-20 63
prgI NP_457267.1 pathogenicity 1 island effector protein Virulence SPI-1 Protein 3e-20 62
prgI NP_806476.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 3e-20 62
ysaG AAS66835.1 YsaG Not tested SSR-1 Protein 2e-16 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_3058 YP_006097353.1 type III secretion system protein VFG0535 Protein 2e-20 63
EC042_3058 YP_006097353.1 type III secretion system protein VFG0996 Protein 5e-16 59
EC042_3058 YP_006097353.1 type III secretion system protein VFG2466 Protein 3e-18 55