Gene Information

Name : EC042_2820 (EC042_2820)
Accession : YP_006097122.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3011871 - 3013142 bp
Length : 1272 bp
Strand : +
Note : -

DNA sequence : 
ATGGACCCACCGACTGGGTCCAATAATTTGAGGGTCCAATACATGGCAAGGCAGACTAAAAAACTCACAGACACTGAAAT
CAAAAACACCAAACCAGCAGACAAAGAGATCAATCTCTTCGATGGTGATGGGCTACTGCTACGAATCGCTCCTTCATCAA
AAGGAGGGAAGAAGAACTGGTATCTCAGATATCCAGTGCCAGTAACCAAGAAGCGCACCAAGATGAGCTTGGGTACCTAC
CCTCACCTCTCATTAGCAAAGGCAAGAGCTTTGCGTGATGAATACCTGTCGTTACTTGCTAATGGTGTTGACCCTCAAGT
CCACATCACTGAAAAAACTAATGCTCTGAAAGATGCCACGGAGCACACGCTACAAGCAGTTTCTCGAAAGTGGTTAGATG
AGAAAATTAAGACTTCTGGCATCTCTCTAGACCATGCAGAAGATATCTGGCGCAGCCTCGAAAAAAACATCTTTTCAACT
CTGGGTGATGTTCCTATCAAAGAGATCCGCCCCAAAATGCTCAAGCAGCATCTTGACCCAATTGAGCAGCGCGGTGTTCT
CGAAACTCTACGTCGTATAATTTCCAGACTGAATGAAATCTTTCGCTATGCTGCCACGGAAGAGCTTATAGAGTTCAATC
CTGCCGACAATCTCGCTCAGCGTTTCAGTAAACCTAAGAAGCAAAACATGCCTGCCCTTCCACCTGATGAGCTACCACGC
TTCATGGTTGCTTTATCTAACGCATCTATACGGTTAGAAACCCGTATGCTGATCGAGTGGCAATTGTTGACGTGGGTAAG
GCCCGGTGAAGCCGTTCGGGCAAGATGGTGTGATATTGATGAAGAGAGCAGATTTTGGAATATCCCTTCAGAATTCATGA
AAATGAAACGCCCACATAAGGTTCCATTGAGTAAAGAAGCTCTCCGCATTTTAGAAAACATGCGCCCTATCAGTGGTCAT
AGAGAATGGGTTTTCCCCAGCATCAAAGCTCCCCTCAGTCATATGCATGAACAAACAGCTAATGCAGCCATAATTCGTAT
GGGGTTTGGCGGAGAGCTTGTTGCTCATGGTATGAGATCTATTGCAAGGACAGCAGCCGAAGAATACGGTAAGTTTAGAA
CGGAGGTGCTTGAATCCGCTCTGGCTCATACTAAAAAAGATGAAATAATAGCCGCGTATAACCGTTCGGAATACCTAGTT
GAAAGAGAAGAACTAATGAAATGGTGGGGGGATTATGTCAGCAGCAAAAAATATAAGATGATGGCAGCATAA

Protein sequence : 
MDPPTGSNNLRVQYMARQTKKLTDTEIKNTKPADKEINLFDGDGLLLRIAPSSKGGKKNWYLRYPVPVTKKRTKMSLGTY
PHLSLAKARALRDEYLSLLANGVDPQVHITEKTNALKDATEHTLQAVSRKWLDEKIKTSGISLDHAEDIWRSLEKNIFST
LGDVPIKEIRPKMLKQHLDPIEQRGVLETLRRIISRLNEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPDELPR
FMVALSNASIRLETRMLIEWQLLTWVRPGEAVRARWCDIDEESRFWNIPSEFMKMKRPHKVPLSKEALRILENMRPISGH
REWVFPSIKAPLSHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEEYGKFRTEVLESALAHTKKDEIIAAYNRSEYLV
EREELMKWWGDYVSSKKYKMMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 7e-82 47
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 7e-82 47
int AAK20773.1 integrase Not tested VPI Protein 5e-82 47
int AAK20803.1 integrase Not tested VPI Protein 5e-82 47
unnamed AAA82714.1 integrase Not tested VPI Protein 5e-82 47
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 3e-81 45
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-65 41
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 9e-66 41
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 9e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_2820 YP_006097122.1 integrase VFG1092 Protein 4e-66 41