Gene Information

Name : EC042_2577 (EC042_2577)
Accession : YP_006096880.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2724019 - 2724768 bp
Length : 750 bp
Strand : -
Note : -

DNA sequence : 
ATGACTAAATATCTCTCTGCCAAAACATTGACAACGGTACTGTCGTTACTGGCAGCAACGGTAAGTTTTTCTACCCAGGC
GTCAGTAACGCCCGATCGTACTCGCCTGATTTTTAATGAAAGCGATAAATCTATCAGCGTGACGCTGCGTAATAACGACC
CCAAACTGCCTTATCTGGCGCAAAGCTGGATTGAAGATGAAAAGGGCGTCAAAATCAGCTCGCCGCTGGCGGTATTGCCG
CCTGTACAGCGCATTGATGCAATGATGAATGGTCAGGTAAAAATTCAGGGCCTGCCGGATATTCATAAATTACCTGCCGA
TCGGGAATCGATGTTCTATTTCAACGTGCGCGAAATTCCGCCGAAATCGAACAAATCCAACACGCTACAAATCGCTCTTC
AGACGCGTATCAAACTTTTCTGGCGACCGAAAGCTCTGGAAAAAAACACCACGCAAAACCCGTGGCAGCATAAAGTGACC
TTAACCCGCAACGGTCAGGAATTTACTGTCAATAACCCGACGCCGTATTACGTCATTTTCAGTAATGCCAGCGCACAGAA
AAATGGCAATCCGGCAGCCGGTTTCTCGCCAATAGTGATGTCGCCGAAAACCTCTGCACCGCTGAATGTGAAGATGGGTA
GCGTACCGGTACTGACCTATGTCAACGACTATGGCGCACGGATGCCGCTCTTTTTCACCTGCAACGGTAACAGTTGCCAG
GTTGATGAAGAGCAGAGCCGCAAAGGCTGA

Protein sequence : 
MTKYLSAKTLTTVLSLLAATVSFSTQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGVKISSPLAVLP
PVQRIDAMMNGQVKIQGLPDIHKLPADRESMFYFNVREIPPKSNKSNTLQIALQTRIKLFWRPKALEKNTTQNPWQHKVT
LTRNGQEFTVNNPTPYYVIFSNASAQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSCQ
VDEEQSRKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 3e-49 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-48 44
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-48 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 9e-49 44
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 8e-49 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 7e-49 44
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 2e-43 43
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 2e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_2577 YP_006096880.1 fimbrial chaperone protein VFG1547 Protein 2e-49 44
EC042_2577 YP_006096880.1 fimbrial chaperone protein VFG0896 Protein 5e-49 44
EC042_2577 YP_006096880.1 fimbrial chaperone protein VFG0885 Protein 1e-43 43