Gene Information

Name : EC042_2422 (EC042_2422)
Accession : YP_006096729.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2552120 - 2553364 bp
Length : 1245 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAAGAAAGGCGACCCCACTCACCACCACACAGATCAAAGCAGCTAAACCAGCGGAAAAAGAATACACCTTACAGGA
TGGCGGCGGGCTTTTTCTCGTCATTAAGCCATCTGGTTCGAAACTATGGCGATTCAACTACTATCGACCATCGAACAAAA
AACGAACAATCATTAGTTTGGGATCGCTCGATGAAGTCTCCCTGGCTGATGCCAGAAAACGCCGTAGCGAGTACAGGACG
TTAATTGCGTCAGGGATTGACCCACAGCATCACGAGCGGCAAAAACGCGAAGCAGAGGCCAGAAGACAGGGCAACACGTT
CGAAAATGTGGCCGCATCGTGGTACGAAATGAAAAAAAACCAGAATCTCGCCCACAATACGATCAAGGACATCTGGCGCT
CGCTAGAGAAATATGTATTCCCGTATATCGGAAACACACCGATAGATACTCTCACCGCTCGCCGCTTTGTTGAGATACTC
ACGCCCATCAAGACACGTGGCAACCTGGAAACACTGAAACGCGTTTTACAGCGCATCAATGAAGTGATGGATTTTGCTGC
CAACAGTGGACTGATTGACATCAACACCGCTGCGAACGTCCGCAAGGCATTCCCTTCCCCCACCAAAAAACACATGCCAA
CCATCCGACCAGAACAACTACCGCAGCTAATGCACGATTTATCGATCGCCAGCATAGAACGGCAAACCAGATTGCTGATT
GAGTGGCAGTTGTTAACCGCAACCCGTCCAGCCGAAGCCTCCGCCGCACGGTGGGAAGAAATCAACCTTGATGCGGCAAC
ATGGACGATACCAGCCGGACGCATGAAGATGCGCCGTGATCATGTGATCCCTCTTTGCGCTCAGGCGATGGCAGTGCTTG
AAGCCATGAAGCCGATTAGCGCACGAAGGGAGCATGTTTTCCCAAGTCTTAAAAATCCAGTGCAACCAATGAGCAGCCAG
ACAGCAAACGCAGCATTACGGCGAATGGGTTACACTGGTGTACTGGTATCTCACGGGCTACGCGCCATATTCAGCACAGC
GGCGAACGAAGAAGGATTTGAGCCGGACGTAATCGAGGCCGCACTCGCACACGTGGACACGAACGAAGTTAGACGGGCAT
ACAACCGAAGCAACTACCTGGAAAAACGTAAAGTGTTAATGTGCTGGTGGGGTGATTTTGTGGAAGCAGCCTCAACCGGA
ACAACCATCGCCAGCGGGCACAGGGGATTACGCGGAATAAAATAA

Protein sequence : 
MARKATPLTTTQIKAAKPAEKEYTLQDGGGLFLVIKPSGSKLWRFNYYRPSNKKRTIISLGSLDEVSLADARKRRSEYRT
LIASGIDPQHHERQKREAEARRQGNTFENVAASWYEMKKNQNLAHNTIKDIWRSLEKYVFPYIGNTPIDTLTARRFVEIL
TPIKTRGNLETLKRVLQRINEVMDFAANSGLIDINTAANVRKAFPSPTKKHMPTIRPEQLPQLMHDLSIASIERQTRLLI
EWQLLTATRPAEASAARWEEINLDAATWTIPAGRMKMRRDHVIPLCAQAMAVLEAMKPISARREHVFPSLKNPVQPMSSQ
TANAALRRMGYTGVLVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRSNYLEKRKVLMCWWGDFVEAASTG
TTIASGHRGLRGIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 5e-106 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 5e-106 52
int AAK20773.1 integrase Not tested VPI Protein 4e-106 52
int AAK20803.1 integrase Not tested VPI Protein 4e-106 52
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-106 52
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-100 51
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 3e-89 47
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-89 47
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-89 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_2422 YP_006096729.1 integrase VFG1092 Protein 2e-89 47