Gene Information

Name : EC042_0232 (EC042_0232)
Accession : YP_006094565.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : putative reverse transcriptase-Group II intron
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 271826 - 273076 bp
Length : 1251 bp
Strand : +
Note : -

DNA sequence :
ATGACAAAGACAAAAGCGTTTAACATTGATAAGTCACTGGTGGTCAGCGCGTACAGGCGAGTGAAGACCAGTGCAGGCGC
GGCGGGAATTGATAAGCAATCGCTGGCGGACTTTGATAAACGGTTAGTTGATAATCTGTACAAAATCTGGAACCGACTTT
CTTCAGGAAGTTATTTCCCACCGGCAGTGAAAGCGGTGGCAATTCCGAAGAAATTGGGTGGAGAGAGAATTCTGGGTATC
CCGACAGTCAGCGATCGTATCGCGCAGACGGTGGTAAAACTGGCCTTTGAGCCACAGGTTGAGCCACATTTTCTGGCAGA
CTCTTACGGCTACAGACCGAATAAATCGGCACTGGATGCTATAGGGGTAACGCGTAAGCGTTGCTGGTATTACGACTGGG
TACTGGAATTTGACATCAAAGGGCTGTTCGATAACATCCCGCACGAACTGATAATGAAAGCCGTGGACAAACACAATCCG
GCCCGGTGGGTAAAATTGTATATACAGCGGTGGCTGACAGCGCCGATGGTGATGTCAGACGGAGAAGTCAGAGCACGAAC
AATGGGAACGCCGCAGGGAGGTGTCATAAGTCCGTTGCTGGCAAACCTGTTCATGCATTATGTGTTTGATAAATGGCTGG
CAAAATATTATCCGAAAGTGCCGTGGTATCGATATGCTGATGATGGCATTTTGCATTGTCACAGCGAAGCAGAAGCGACT
GAAATGCGAGAAGTATTACGCAAAAGATTTAGCGAATGCGGACTGGAAATGCATCCGGAGAAAACGCGAGTTATCTACTG
CAAAGATGGAAGCCGGAAGGGTGATTATGAACATACCATGTTCGACTTTCTGGGGTACACATTCAGGCGACGCGTAGTAA
AGAACGTTAAGCGAAACAGTCTGTTTGTAAGTTTTACCCCCGCAGCGAGCAAATCAGCGCTAAAGGCAATGCGTCGGGAA
ATCAAAGCGACAGGGATAAGGAAAAGAGTGGATTTAAGCATTGAGCAGATAGCGAAATGGATAAATCCAAAACTGAATGG
CTGGATAAATTATTACGGGCGATATACCTGTTCGGAATTATACAGCGTGTTCAGATATATCAATAAAGCACTGGTGAGGT
GGGGGCGTAAGAAATATAAAATGCTCAGCCGATACAAGACAAGAGCCTCAAAATTTCTGGAAGAAATGGCGAAGCGAAGT
CCACAGTTGTTTGCCCACTGGCGTCTGAAGATGAGAGGCGGACTTGTTTGA

Protein sequence :
MTKTKAFNIDKSLVVSAYRRVKTSAGAAGIDKQSLADFDKRLVDNLYKIWNRLSSGSYFPPAVKAVAIPKKLGGERILGI
PTVSDRIAQTVVKLAFEPQVEPHFLADSYGYRPNKSALDAIGVTRKRCWYYDWVLEFDIKGLFDNIPHELIMKAVDKHNP
ARWVKLYIQRWLTAPMVMSDGEVRARTMGTPQGGVISPLLANLFMHYVFDKWLAKYYPKVPWYRYADDGILHCHSEAEAT
EMREVLRKRFSECGLEMHPEKTRVIYCKDGSRKGDYEHTMFDFLGYTFRRRVVKNVKRNSLFVSFTPAASKSALKAMRRE
IKATGIRKRVDLSIEQIAKWINPKLNGWINYYGRYTCSELYSVFRYINKALVRWGRKKYKMLSRYKTRASKFLEEMAKRS
PQLFAHWRLKMRGGLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 3e-104 50
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 9e-77 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC042_0232 YP_006094565.1 putative reverse transcriptase-Group II intron VFG1512 Protein 5e-77 44