Gene Information

Name : sitC (EC042_1519)
Accession : YP_006095833.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1581178 - 1582035 bp
Length : 858 bp
Strand : -
Note : -

DNA sequence : 
ATGAACGTGCTACTGGAACCCTTCAGCTATGAATATATGCTCAATGCGATGTGGGTCTCGGCGATGGTCGGCGGTCTCTG
CGCTTTCCTGTCATGCTATCTGATGCTAAAAGGCTGGTCGCTGATTGGCGATGCGCTGTCGCACTCTATTGTCCCGGGTG
TTGCGGGGGCATATATGCTGGGGCTTCCGTTTTCTCTGGGAGCCTTCTTTTCCGGCGGACTGGCAGCGGGCAGCATGCTG
TTTCTTAACCAACGCACTCGCTTAAAAGAAGATGCCATCATCGGCCTGATCTTCTCCTCCTTTTTTGGCCTGGGGCTGTT
TATGGTGTCATTGAACCCGACATCCGTGAACATTCAGACCATCGTCCTGGGCAATATTCTGGCAATCGATCCGGCGGATA
TCCTGCAACTCACTATCATTGGCATTCTCTCGATCATCGTGCTTTTTTTCAAATGGAAAGATCTTATGGTGACCTTTTTC
GACGAGAATCACGCTCGTGCTATTGGATTGCATCCGGGCAGATTAAAAATCCTCTTCTTCACCCTGCTGTCGGTTTCGAC
CGTTGCGGCGCTGCAAACGGTTGGTGCCTTTCTGGTGATCTGTCTGGTGGTGACTCCCGGTGCAACAGCATGGTTGTTAA
CCGATCATTTTCCCCGCCTGCTCATAATTGCTGTAACTATTGGCAGTGTAACCAGTTTCCTCGGCGCGTGGGTCAGTTAC
TTTCTGGACGGCGCGACAGGTGGAATCATCGTGGTGGCGCAGACACTGCTGTTTCTTTTAGCATTTGTATTTGCGCCCAC
CCATGGGCTTTTGGCAAATCGTCGGCGTGCGCATAAAGCGCTGGAGGATCGCTCATGA

Protein sequence : 
MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSML
FLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDHFPRLLIIAVTIGSVTSFLGAWVSY
FLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-90 87
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-90 87
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-90 87
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-90 87
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-90 87

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_006095833.1 iron ABC transporter permease BAC0351 Protein 1e-90 87
sitC YP_006095833.1 iron ABC transporter permease BAC0441 Protein 4e-66 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_006095833.1 iron ABC transporter permease VFG0527 Protein 1e-90 87