Gene Information

Name : sitD (EC042_1518)
Accession : YP_006095832.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1580324 - 1581178 bp
Length : 855 bp
Strand : -
Note : -

DNA sequence : 
ATGGCATTATTACTGGAGCCACTGCAGTTCACCTTTATGAGTCACGCACTGCTGATTTCACTGGTAGTTTCCATACCCTG
TGCGCTGCTGTCGGTCTTTCTGGTCCTGAAAGGTTGGGCACTGATGGGTGACGCGATGAGTCATGCGGTTTTTCCTGGCA
TCGTGCTTGCCTGGATTCTGGGGTTACCTCTGGCTACAGGGGCATTCGTCGCCGGAGTATTCTGCGCGGTGGCGACGGGA
TACCTGAAAGACAACAGCCGAATCAAGCAAGATACAGTGATGGGGATTGTTTTTTCTGGCATGTTTGCCGCAGGTCTGAT
CTTGTATATTGCAGTCAAACCAGACGTACATCTTGACCATATTCTTTTCGGCGACATGCTCGGGGTAACCATCGGCGATA
TAATCCAGACGGTGATTATTGCCGGGTTGGTTACACTTGTTATTAGCGTAAAATGGCGGGATTTTTTGCTGTTCAGCTTT
GATTATCAACAGGCGCAGGTAAGCGGTTTGCATACGAGATGTCTGCATTATGGGCTGCTGTGCATGGTCTCTCTGACCAT
TGTGGCGACGCTGAAAGCGGTAGGTATCATTCTCTCCATTTCTCTGCTCATTGCGCCTGGCGCCATTGCGGTACTCCTGA
CACAACGCTTTCATATTGCGCTCCTACTGGCGATTGGCATATCGGTAATAGTGTCAATGACTGGTGTCTGGTTGTCCTTT
TTTATCGACAGTGCACCAGCTCCGACGATTGTCGTCTTATTCGCGGTTGTGTTCATCATGACGTTCACCGTTACCAGCAT
CAACGCACGCACAAAGGGAAACACCCATACACAGGATTTGTCATCACCCAATTAG

Protein sequence : 
MALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWILGLPLATGAFVAGVFCAVATG
YLKDNSRIKQDTVMGIVFSGMFAAGLILYIAVKPDVHLDHILFGDMLGVTIGDIIQTVIIAGLVTLVISVKWRDFLLFSF
DYQQAQVSGLHTRCLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLAIGISVIVSMTGVWLSF
FIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNTHTQDLSSPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-81 69
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-81 69
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-81 68
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-81 68
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-81 68

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_006095832.1 iron ABC transporter permease BAC0352 Protein 1e-81 68
sitD YP_006095832.1 iron ABC transporter permease BAC0442 Protein 5e-58 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_006095832.1 iron ABC transporter permease VFG0528 Protein 1e-81 68