Gene Information

Name : EcDH1_0728 (EcDH1_0728)
Accession : YP_006090701.1
Strain : Escherichia coli DH1
Genome accession: NC_017625
Putative virulence/resistance : Virulence
Product : general secretion pathway protein M
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 772637 - 773173 bp
Length : 537 bp
Strand : +
Note : PFAM: General secretion pathway M protein; KEGG: sbc:SbBS512_E3403 general secretion pathway protein M

DNA sequence : 
ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGGCACA
ACACCTGGCGGGGCGTTCTCCGCGTGAAAAGGGCATGTTACTGGCAGCGGTGGTGTTCCTGTTTAGCGTCGGATATTACG
TCCTCATCTGGCAGCCGTTGAGCGAACGGATTGAGCAACAGGAGACAATATTGCAGCAGCTGGTGGCGATGAACACCCGA
CTGAAGAACGCCGCGCCGGATATTATTGCAGCGCGAAAATCTGCCACAACAACGCCTGCGCAGGTATCGCGGGTCATCAG
TGACAGTGCTTCCGCGCACTCGGTGGTCATCAGGCGGATAGCCGATCGTGGGGAGAATATTCAGGTCTGGATAGAACCTG
TGGTGTTTAATGACCTGCTGAAATGGTTAAACGCACTGGATGAAAAATATGCGCTGCGGGTGACACAAATTGATGTCAGT
GCTGCTGAGAAGCCTGGGATGGTGAATGTGCAGCGGCTGGAGTTTGGACGGGGGTAA

Protein sequence : 
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTR
LKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVS
AAEKPGMVNVQRLEFGRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yghD CAI43907.1 putative secretion pathway protein Not tested LEE Protein 7e-79 98
gspM YP_854398.1 general secretion pathway protein YghD Not tested PAI I APEC-O1 Protein 3e-78 97
gspM CAE85225.1 GspM, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-77 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcDH1_0728 YP_006090701.1 general secretion pathway protein M VFG2056 Protein 8e-58 97