Gene Information

Name : EcDH1_3353 (EcDH1_3353)
Accession : YP_006093262.1
Strain : Escherichia coli DH1
Genome accession: NC_017625
Putative virulence/resistance : Virulence
Product : GTP-binding protein HSR1-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3603194 - 3604057 bp
Length : 864 bp
Strand : +
Note : PFAM: GTP-binding protein HSR1-related; KEGG: kpe:KPK_4950 GTPase family protein

DNA sequence : 
ATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCA
GCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCA
ATGCCCTGTTTGCCGGAGATATATCACCGGTCAGCGATGTGGCGGCCTGTACACGTGAGCCACTGCGCTTTCGCCTGCAA
GTCGGCGACCGCTATATAACGCTGATGGATCTGCCCGGCGTGGGCGAAAGTGGCGCTCGCGATACCGAGTATGCTGCGCT
GTACCGCGAACAGCTTCCTCGCCTCGACCTGGTACTGTGGCTGATTAAGGCCGATGACCGGGCGCTGACGGTGGATGAAC
ATTTTTATCATCAGGTGATTGGAGAGGTATACCGGCATAAGGTGCTGTTTGTTATCAGCCAGTCGGATAAGGCCGAACCT
ACCAGCGGTGGGGGACAGTTGTCCACGGCGCAGAAGCAGAATATCAGCCGCAAAATCTGCCTGCTGCATGAGCTGTTCCA
GCCCGTCCATCCGGTGTGTGCTGTGTCGGTCCGTCTACAATGGGGGCTTAAGGTGATGGCCGAGCGGATGATTAAGTGCC
TGCCACGTGAGGCCACCAGCCCGGTGGTGTCGCAACTCCATCCTTCCTTTCGCACGACGGTAGTCCGGGAACAGGCTCGT
AGCGATTTTGGTGAAACCGTCGGGGCCGTACTCGATAGCATCAGTGCCTTTCCCCTGATACCCGCCCCGGTGCGGGCCGT
CATTCAGGCCGTGCGCACCACGGTGGTGTCAGTGGCCCGCGCCGTCTGGGATTTCTTCTTCTGA

Protein sequence : 
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQ
VGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEP
TSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQAR
SDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08471.1 unknown Not tested SRL Protein 2e-57 50
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 1e-56 50
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 1e-57 50
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 4e-57 50
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 8e-58 50
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 1e-56 50
unnamed AAL99256.1 unknown Not tested LEE Protein 3e-57 50
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 5e-57 50
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 5e-57 50
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 7e-56 50
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 5e-57 50
Z1210 NP_286745.1 histone Not tested TAI Protein 9e-56 49
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 9e-56 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcDH1_3353 YP_006093262.1 GTP-binding protein HSR1-like protein VFG1674 Protein 8e-58 50
EcDH1_3353 YP_006093262.1 GTP-binding protein HSR1-like protein VFG1062 Protein 1e-57 50
EcDH1_3353 YP_006093262.1 GTP-binding protein HSR1-like protein VFG0654 Protein 6e-57 50