Gene Information

Name : EcDH1_3023 (EcDH1_3023)
Accession : YP_006092940.1
Strain : Escherichia coli DH1
Genome accession: NC_017625
Putative virulence/resistance : Virulence
Product : ParB domain-containing protein nuclease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3245755 - 3246372 bp
Length : 618 bp
Strand : +
Note : PFAM: ParB domain protein nuclease; KEGG: ssn:SSON_0553 hypothetical protein

DNA sequence :
ATGCAACAACGATTAACGCAGGATTTAACGCAATTTCTCGCCAGCTTGCCGGAAGATGATCGCATCAAAGCGATTAATGA
AATCCGCATGGCGATCCATCAGGTTAGCCCCTTTCGTGAAGAGCCAGTGGATTGCGTTCTGTGGGTTAAAAACAGCCAAC
TTATGCCTAATGATTACAACCCAAACAACGTGGCACCACCCGAAAAAAAACTGCTGCAAAAATCCATTGAAATAGATGGT
TTTACCCAACCCATTGTGGTCACACATACGGATAAAAATGCCATGGAAATCGTGGATGGTTTTCACCGCCATGAAATTGG
TAAAGGCTCATCATCATTAAAATTACGCTTAAAAGGTTATTTGCCGGTGACCTGTCTGGAAGGTACGCGTAATCAACGCA
TCGCCGCGACTATTCGTCATAATCGCGCTCGTGGACGCCATCAAATCACCGCCATGTCGGAAATCGTCCGTGAACTTAGC
CAGTTGGGATGGGACGATAATAAAATTGGCAAAGAGCTGGGAATGGACAGCGACGAAGTGCTGCGCCTGAAGCAAATTAA
CGGCCTGCAAGAGTTGTTTGCCGACCGTCAATATTCCCGCGCCTGGACGGTTAAATAG

Protein sequence :
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDG
FTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 1e-55 59
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 8e-56 59
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 8e-56 59
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 1e-55 59
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 6e-55 58
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 6e-55 58
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 4e-55 57
ORF_30 AAZ04440.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 9e-43 55
APECO1_3503 YP_854305.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-42 55
c5208 NP_757056.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-42 55
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 2e-31 53
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 3e-31 53
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 8e-30 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcDH1_3023 YP_006092940.1 ParB domain-containing protein nuclease VFG1505 Protein 2e-55 57