Gene Information

Name : EcDH1_2919 (EcDH1_2919)
Accession : YP_006092841.1
Strain : Escherichia coli DH1
Genome accession: NC_017625
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3131412 - 3132140 bp
Length : 729 bp
Strand : +
Note : PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbc:SbBS512_E0634 periplasmic pilus chaperone family protein

DNA sequence : 
ATGACATTTATTAAAGGATTACCCTTAATGTTGTTAACCATCAGCTTGGGTTGCAATGCTGCGGTGCAACCCGATCGCAC
ACGCATTGTGTTTAACGCCAATGACAAAGCCACCAGCCTGCGTATCGAAAACCAAAGTGACAAACTGCCTTATCTTGCTT
ATTCCTGGATAGAAAATGAAAAAGGGGAGAAAAGCGATGCTCTTCTGGTCGCTTTGCCCCCTATTCAACGTCTGGAACCG
AAAGCGACATCGCAGGTGCGGGTTGTGAAACAAGCCTCAACCACACAATTACCTGGCGATCGCGAAACGCTATTTTTCTA
CAATATGCGCGAAATTCCTCCCGCTCCGGATAAAAGCAGCGACCATGCGATACTTCAGGTCGCTATTCAAAGTCGTATTA
AATTGTTCTGGCGACCGGCTGCATTACGCAAGAAAGCAGGAGAAAAGGTCGAACTGCAGTTACAGGTCAGCCAGCAGGGC
AACCAACTGACACTGAAAAATCCTACCGCGTATTATCTGACCATTGCCTATCTGGGGAGAAATGAAAAAGGCGTTCTCCC
AGGCTTCAAAACCGTGATGGTTGCACCTTTTAGTACGGTCAACACAAACACCGGAAGTTATAGCGGCAGCCAGTTTTATC
TCGGTTACATGGATGATTACGGCGCATTACGCATGACGACGCTCAACTGCAGCGGACAATGCCGTTTACAAGCAGTGGAG
GCGAAATGA

Protein sequence : 
MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEP
KATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQG
NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVE
AK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 7e-34 42
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 3e-40 41
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 5e-40 41
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 4e-40 41
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 7e-40 41
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 6e-40 41
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 6e-40 41
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 7e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcDH1_2919 YP_006092841.1 Pili assembly chaperone, N-terminal VFG0885 Protein 3e-34 42
EcDH1_2919 YP_006092841.1 Pili assembly chaperone, N-terminal VFG1547 Protein 2e-40 41
EcDH1_2919 YP_006092841.1 Pili assembly chaperone, N-terminal VFG0896 Protein 2e-40 41