Gene Information

Name : EcDH1_2115 (EcDH1_2115)
Accession : YP_006092059.1
Strain : Escherichia coli DH1
Genome accession: NC_017625
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2258521 - 2258904 bp
Length : 384 bp
Strand : -
Note : PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E1674 multiple antibiotic resistance protein MarA

DNA sequence : 
ATGTCCAGACGCAATACTGACGCTATTACCATTCATAGCATTTTGGACTGGATCGAGGACAACCTGGAATCGCCACTGTC
ACTGGAGAAAGTGTCAGAGCGTTCGGGTTACTCCAAATGGCACCTGCAACGGATGTTTAAAAAAGAAACCGGTCATTCAT
TAGGCCAATACATCCGCAGCCGTAAGATGACGGAAATCGCGCAAAAGCTGAAGGAAAGTAACGAGCCGATACTCTATCTG
GCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATA
CCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCTAG

Protein sequence : 
MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYL
AERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-21 43
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-21 43
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 1e-19 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator NC_002695.1.917339.p Protein 9e-57 100
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator BAC0560 Protein 9e-57 100
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP000034.1.gene1596. Protein 1e-56 99
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP001138.1.gene1637. Protein 2e-53 96
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP001918.1.gene2033. Protein 1e-52 93
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 2e-52 93
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 6e-23 43
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 2e-21 43
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 1e-19 42
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 3e-19 42
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator BAC0371 Protein 1e-19 42
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 4e-20 42
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 3e-20 42
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 8e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator VFG1038 Protein 1e-21 43
EcDH1_2115 YP_006092059.1 AraC family transcriptional regulator VFG0585 Protein 4e-20 42