Gene Information

Name : SU5_02018 (SU5_02018)
Accession : YP_006087652.1
Strain : Salmonella enterica B182
Genome accession: NC_017623
Putative virulence/resistance : Virulence
Product : Secretion system effector SseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2223258 - 2223680 bp
Length : 423 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCAGCTATAACGTAGAAAAACAACGACTGTCCTGGGAACTGCAAGTCAATGTTTTGCAGACGCAAATGAAAACAAT
TGATCAAGCGTTTAAAGCATCAATGATTACTGCGGGTGGCGCCATGTTGTCGGGAGTGCTGACGATAGGATTAGGGGCTG
TAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGACACACCGCTGGGGGAGTCATGGGCCTGGGGGCCGGTGTA
GCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCCCTGAC
GGACATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGCTGAAA
TACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MRSYNVEKQRLSWELQVNVLQTQMKTIDQAFKASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGV
AQRQSDQDKAIADLQQNGAQSYNKSLTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 3e-49 98
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 3e-49 98
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 3e-49 98
sseD CAA12188.1 SseD Virulence SPI-2 Protein 2e-49 98
sseD AAC28882.1 SseD Virulence SPI-2 Protein 2e-48 97
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 7e-48 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SU5_02018 YP_006087652.1 Secretion system effector SseD VFG0502 Protein 9e-50 98