Gene Information

Name : SSUD12_0486 (SSUD12_0486)
Accession : YP_006082059.1
Strain : Streptococcus suis D12
Genome accession: NC_017621
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 496817 - 497512 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGAACCAGCTTATTAGACTAACAAGTATCAATAAATCCTACAAAAATGGTGATCAAGAACTCCGAGTTCTAAAGGA
TATTGATTTAGAGGTGGAAGAAGGAGAATTTCTTGCCATTATGGGACCCTCTGGTTCAGGGAAATCAACTCTGATGAACA
TTATTGGGCTTTTAGATCGTTCCAGTTCAGGAAACTATTGGCTGGAAGGTGAAGAAGTCAGTCAACTTTCTGAGAAAAAA
TTAGCTCAGGTTCGGAATGACCAAATCGGTTTCGTCTTCCAACAATTTTTCCTCTTATCGAAACTCAACGCCCTTCAGAA
TGTAGAATTACCCTTGATTTATGCTGGAGTTCCATCAAGCAAACGTAAGGAACTAGCGAAACAATATCTTGAAAAAGTCG
AGTTGGCAGAGCGAATGACGCATTTACCATCGGAATTGTCTGGTGGTCAAAAACAACGGGTGGCTATTGCGCGTGCACTA
GTCAATACTCCGGCTATTATTTTAGCGGACGAGCCAACAGGAGCCTTAGATACTAAGACAGGTGAGCAAATCATGGAACT
CTTGACTGAGTTAAATAATGAAGGAAAGACTATTATCATGGTTACGCACGAGCCTGAGATTGCTGCCTACGCAAAACGAA
AAATCGTTCTACGTGATGGAGTGATCACTGAAGATAGTCGAAGGGAGGGACTTTAG

Protein sequence : 
MKNQLIRLTSINKSYKNGDQELRVLKDIDLEVEEGEFLAIMGPSGSGKSTLMNIIGLLDRSSSGNYWLEGEEVSQLSEKK
LAQVRNDQIGFVFQQFFLLSKLNALQNVELPLIYAGVPSSKRKELAKQYLEKVELAERMTHLPSELSGGQKQRVAIARAL
VNTPAIILADEPTGALDTKTGEQIMELLTELNNEGKTIIMVTHEPEIAAYAKRKIVLRDGVITEDSRREGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-39 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-39 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-39 43
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSUD12_0486 YP_006082059.1 ABC transporter NC_012469.1.7686878. Protein 1e-86 80
SSUD12_0486 YP_006082059.1 ABC transporter NC_008702.1.4606598. Protein 1e-50 50
SSUD12_0486 YP_006082059.1 ABC transporter CP001581.1.gene798.p Protein 1e-40 45
SSUD12_0486 YP_006082059.1 ABC transporter CP001581.1.gene598.p Protein 3e-35 41