Gene Information

Name : SSUD12_2062 (SSUD12_2062)
Accession : YP_006083573.1
Strain : Streptococcus suis D12
Genome accession: NC_017621
Putative virulence/resistance : Virulence
Product : ATP-binding ABC transport protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2077654 - 2078424 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAGCAATCATTGAATTAAAAGATGTCAATTTAGCATATACAGCCAGCCAGACCTTGGCTTTAGAAGATGTTAATTT
GGTGATTCCCAGAGGGAGTCGGACGGCTATTGTTGGACCAAATGGTGCTGGGAAGTCCAGTCTATTCAAGGTCATTTTGG
GGTTGGAAAAACCTGACACAGGGCAGGTTCGCTTGCTTGGTCAGGAGGCAGGTCTAGAGAGGTTGATTGCTCAAAAAGTA
GCCTATATTCCCCAATCCAGTCAAGTAAATTGGCAATTTCCTGCAACAGTCTTTGAAATTGTTCTGATGGGACGATTCGC
TCATAGTAAGGGGATGTTTAGAAGACCGACTAAGGCTGATAGACAGATTGTTGAGCAGGCTCTAGAACGGTTAAAAATTG
CGGATTTACGCCATCGTCAGATTGATCAGCTTTCAGGTGGGCAGCGTCAGCGGGTATTTTTAGCCAGAGCCCTGGCGCAG
GAAGCAGAATTGTATCTTATGGATGAGCCTCTAGCAGGGATTGATCAGGCAACAGAAATCATGATCATGGATATGCTCAA
GGAGTTCCAATGTGAAGGGAAAACTTCCATTGTCATTCATCATGACTTAACGACGCTGGATGCCTACTTTGATCACCTTG
TTTGGCTTCATAAGCATGTGATTGACTCTGGTCCGATGGATGAGACTTTGACAAGCGAGAATTATCAGGCGGCCTACGGC
ATAGGAAATGGGCTGTTTCTAGGAAATGCCAAAGGAGGCAGTCATGTTTGA

Protein sequence : 
MSAIIELKDVNLAYTASQTLALEDVNLVIPRGSRTAIVGPNGAGKSSLFKVILGLEKPDTGQVRLLGQEAGLERLIAQKV
AYIPQSSQVNWQFPATVFEIVLMGRFAHSKGMFRRPTKADRQIVEQALERLKIADLRHRQIDQLSGGQRQRVFLARALAQ
EAELYLMDEPLAGIDQATEIMIMDMLKEFQCEGKTSIVIHHDLTTLDAYFDHLVWLHKHVIDSGPMDETLTSENYQAAYG
IGNGLFLGNAKGGSHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-42 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 9e-43 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 9e-43 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 8e-43 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSUD12_2062 YP_006083573.1 ATP-binding ABC transport protein BAC0400 Protein 2e-47 46
SSUD12_2062 YP_006083573.1 ATP-binding ABC transport protein BAC0350 Protein 5e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSUD12_2062 YP_006083573.1 ATP-binding ABC transport protein VFG0526 Protein 4e-43 42