Gene Information

Name : SSUD12_1346 (SSUD12_1346)
Accession : YP_006082882.1
Strain : Streptococcus suis D12
Genome accession: NC_017621
Putative virulence/resistance : Resistance
Product : erythromycin ribosome methylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1353884 - 1354621 bp
Length : 738 bp
Strand : -
Note : -

DNA sequence :
ATGAACAAAAATATAAAATATTCTCAAAACTTTTTAACGAGTGAAAAAGTACTCAACCAAATAATAAAACAATTGAATTT
AAAAGAAACCGATACCGTTTACGAAATTGGAACAGGTAAAGGGCATTTAACGACGAAACTGGCTAAAATAAGTAAACAGG
TAACGTCTATTGAATTAGACAGTCATCTATTCAACTTATCGTCAGAAAAATTAAAACTGAATACTCGTGTCACTTTAATT
CACCAAGATATTCTACAGTTTCAATTCCCTAACAAACAGAGGTATAAAATTGTTGGGAATATTCCTTACCATTTAAGCAC
ACAAATTATTAAAAAAGTGGTTTTTGAAAGCCGTGCGTCTGACATCTATCTGATTGTTGAAGAAGGATTCTACAAGCGTA
CCTTGGATATTCACCGAACACTAGGGTTGCTCTTGCACACTCAAGTCTCGATTCAGCAATTGCTTAAGCTGCCAGCGGAA
TGCTTTCATCCTAAACCAAAAGTAAACAGTGTCTTAATAAAACTTACCCGCCATACCACAGATGTTCCAGATAAATATTG
GAAGCTATATACGTACTTTGTTTCAAAATGGGTCAATCGAGAATATCGTCAACTGTTTACTAAAAATCAGTTTCATCAAG
CAATGAAACACGCCAAAGTAAACAATTTAAGTACCGTTACTTATGAGCAAGTATTGTCTATTTTTAATAGTTATCTATTA
TTTAACGGGAGGAAATAA

Protein sequence :
MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLI
HQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLL
FNGRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ermA NP_373288.1 rRNA methylase Not tested Type-II SCCmec Protein 8e-54 52
ermA-3 YP_190052.1 rRNA adenine N-6-methyltransferase Not tested Type-II SCCmec Protein 8e-54 52
unnamed BAB47663.1 rRNA adenine N-6-methyltransferase Not tested Type-III SCCmec Protein 2e-53 52
unnamed BAC53825.1 rRNA adenine N-6-methyltransferase Not tested SRImec-III and SCCmec-III region Protein 2e-53 52
ermA BAC57474.1 rRNA methylase Not tested Type-IIIinv SCCmec Protein 6e-54 52
ermA BAA82205.1 rRNA adenine N-6-methyltransferase Not tested Type-II SCCmec Protein 6e-54 52
ermA1 YP_039522.1 rRNA adenine N-6-methyltransferase 1 Not tested Type-II SCCmec Protein 8e-54 52
ermA NP_370576.1 rRNA methylase Not tested Type-II SCCmec Protein 8e-54 52
ermC NP_273130.1 rRNA adenine N-6-methyltransferase Not tested IHT-A Protein 3e-57 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase AM410044.gene14.p01 Protein 1e-111 99
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase AM903082.gene3.p01 Protein 1e-111 99
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase AM180355.1.gene2254. Protein 8e-111 98
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase AM180355.1.gene2259. Protein 8e-111 98
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_009782.5559087.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002758.1121630.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002952.2859615.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002745.1123579.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002745.1124852.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_009782.5559229.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002758.1120012.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002952.2859614.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002745.1122822.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002745.1124324.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_002745.1125313.p0 Protein 4e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase AJ313523.1.orf0.gene Protein 8e-54 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase V01278.gene.p01 Protein 2e-58 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase M64090.gene.p01 Protein 3e-56 52
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase M15332.gene.p01 Protein 2e-53 51
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_010686.6295746.p0 Protein 1e-57 51
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_010685.6295744.p0 Protein 1e-57 51
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_007792.3912746.p0 Protein 5e-57 50
SSUD12_1346 YP_006082882.1 erythromycin ribosome methylase NC_007209.3523503.p0 Protein 1e-57 50