Gene Information

Name : SSU12_0879 (SSU12_0879)
Accession : YP_006078310.1
Strain : Streptococcus suis SS12
Genome accession: NC_017619
Putative virulence/resistance : Resistance
Product : ErmB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 901271 - 902008 bp
Length : 738 bp
Strand : +
Note : -

DNA sequence :

ATGAACAAAAATATAAAATATTCTCAAAACTTTTTAACGAGTGAAAAAGTACTCAACCAAATAATAAAACAATTGAATTT
AAAAGAAACCGATACCGTTTACGAAATTGGAACAGGTAAAGGGCATTTAACGACGAAACTGGCTAAAATAAGTAAACAGG
TAACGTCTATTGAATTAGACAGTCATCTATTCAACTTATCGTCAGAAAAATTAAAACTGAATACTCGTGTCACTTTAATT
CACCAAGATATTCTACAGTTTCAATTCCCTAACAAACAGAGGTATAAAATTGTTGGGAATATTCCTTACCATTTAAGCAC
ACAAATTATTAAAAAAGTGGTTTTTGAAAGCCATGCGTCTGACATCTATCTGATTGTTGAAGAAGGATTCTACAAGCGTA
CCTTGGATATTCACCGAACACTAGGGTTGCTCTTGCACACTCAAGTCTCGATTCAGCAATTGCTTAAGCTGCCAGCGGAA
TGCTTTCATCCTAAACCAAAAGTAAACAGTGTCTTAATAAAACTTACCCGCCATACCACAGATGTTCCAGATAAATATTG
GAAGCTATATACGTACTTTGTTTCAAAATGGGTCAATCGAGAATATCGTCAACTGTTTACTAAAAATCAGTTTCATCAAG
CAATGAAACACGCCAAAGTAAACAATTTAAGTACCGTTACTTATGAGCAAGTATTGTCTATTTTTAATAGTTATCTATTA
TTTAACGGGAGGAAATAA

Protein sequence :

MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLI
HQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLL
FNGRK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
ermA	BAA82205.1	rRNA adenine N-6-methyltransferase	Not tested	Type-II SCCmec	Protein	4e-54	52
ermA1	YP_039522.1	rRNA adenine N-6-methyltransferase 1	Not tested	Type-II SCCmec	Protein	5e-54	52
ermA	NP_370576.1	rRNA methylase	Not tested	Type-II SCCmec	Protein	5e-54	52
ermA	NP_373288.1	rRNA methylase	Not tested	Type-II SCCmec	Protein	5e-54	52
ermA-3	YP_190052.1	rRNA adenine N-6-methyltransferase	Not tested	Type-II SCCmec	Protein	5e-54	52
unnamed	BAB47663.1	rRNA adenine N-6-methyltransferase	Not tested	Type-III SCCmec	Protein	1e-53	52
unnamed	BAC53825.1	rRNA adenine N-6-methyltransferase	Not tested	SRImec-III and SCCmec-III region	Protein	1e-53	52
ermA	BAC57474.1	rRNA methylase	Not tested	Type-IIIinv SCCmec	Protein	4e-54	52
ermC	NP_273130.1	rRNA adenine N-6-methyltransferase	Not tested	IHT-A	Protein	3e-57	51

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
SSU12_0879	YP_006078310.1	ErmB	AM903082.gene3.p01	Protein	3e-112	99
SSU12_0879	YP_006078310.1	ErmB	AM410044.gene14.p01	Protein	3e-112	99
SSU12_0879	YP_006078310.1	ErmB	AM180355.1.gene2254.	Protein	2e-110	98
SSU12_0879	YP_006078310.1	ErmB	AM180355.1.gene2259.	Protein	2e-110	98
SSU12_0879	YP_006078310.1	ErmB	NC_002745.1124324.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002745.1125313.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	AJ313523.1.orf0.gene	Protein	4e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_009782.5559087.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002758.1121630.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002952.2859615.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002745.1123579.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002745.1124852.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_009782.5559229.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002758.1120012.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002952.2859614.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	NC_002745.1122822.p0	Protein	2e-54	52
SSU12_0879	YP_006078310.1	ErmB	M64090.gene.p01	Protein	3e-56	52
SSU12_0879	YP_006078310.1	ErmB	V01278.gene.p01	Protein	2e-58	52
SSU12_0879	YP_006078310.1	ErmB	M15332.gene.p01	Protein	2e-53	51
SSU12_0879	YP_006078310.1	ErmB	NC_010686.6295746.p0	Protein	1e-57	51
SSU12_0879	YP_006078310.1	ErmB	NC_010685.6295744.p0	Protein	1e-57	51
SSU12_0879	YP_006078310.1	ErmB	NC_007209.3523503.p0	Protein	1e-57	50
SSU12_0879	YP_006078310.1	ErmB	NC_007792.3912746.p0	Protein	5e-57	50