Gene Information

Name : SSU12_0474 (SSU12_0474)
Accession : YP_006077913.1
Strain : Streptococcus suis SS12
Genome accession: NC_017619
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 499139 - 499834 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGAACCAGCTTATTAGACTAACAAGTATCAATAAATCCTACAAAAATGGTGATCAAGAACTCCGAGTTTTAAAGAA
TATTGATTTAGAGGTGGAAGAGGGAGAATTTCTTGCCATTATGGGGCCCTCTGGTTCAGGGAAATCAACCTTGATGAACA
TTATTGGGCTTTTGGATCGTTTCAGTTCAGGAAACTATTGGCTGGAAGGTGAAGAAGTCAGTCAACTTTCTGAGAAAAAA
TTAGCTCAGGTTCGGAATGACCAAATCGGTTTCGTCTTTCAACAATTTTTCCTCTTATCGAAACTTAACGCCCTTCAAAA
TGTAGAATTACCCTTGATTTATGCTGGAGTTCCATCAAGCAAACGTAAGGAACTAGCAAAACAGTATCTTGAAAAAGTTG
AGTTGGCAGAGCGGATGACGCATTTACCATCAGAATTGTCTGGTGGTCAAAAACAACGGGTAGCTATTGCTCGTGCACTA
GTCAATACCCCAGCTATTATTTTAGCGGATGAACCTACAGGGGCTCTAGATACCAAGACAGGTGAGCAGATTATGCAACT
TCTGACGGAGTTGAATAATGAAGGAAAGACCATTATCATGGTTACGCATGAGCCTGAGATTGCTGCCTACGCAAAACGAA
AAATCGTTCTACGTGATGGAGTGATCACTGAAGATAGTCGAAGGGAGGGAGTTTAG

Protein sequence : 
MKNQLIRLTSINKSYKNGDQELRVLKNIDLEVEEGEFLAIMGPSGSGKSTLMNIIGLLDRFSSGNYWLEGEEVSQLSEKK
LAQVRNDQIGFVFQQFFLLSKLNALQNVELPLIYAGVPSSKRKELAKQYLEKVELAERMTHLPSELSGGQKQRVAIARAL
VNTPAIILADEPTGALDTKTGEQIMQLLTELNNEGKTIIMVTHEPEIAAYAKRKIVLRDGVITEDSRREGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-39 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-39 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-39 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 44
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 5e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSU12_0474 YP_006077913.1 ABC transporter NC_012469.1.7686878. Protein 7e-86 81
SSU12_0474 YP_006077913.1 ABC transporter NC_008702.1.4606598. Protein 9e-50 49
SSU12_0474 YP_006077913.1 ABC transporter CP001581.1.gene798.p Protein 2e-39 44
SSU12_0474 YP_006077913.1 ABC transporter CP001581.1.gene598.p Protein 3e-34 41