Gene Information

Name : SSUJS14_1378 (SSUJS14_1378)
Accession : YP_006076709.1
Strain : Streptococcus suis JS14
Genome accession: NC_017618
Putative virulence/resistance : Virulence
Product : hemolysin
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1386632 - 1388125 bp
Length : 1494 bp
Strand : -
Note : -

DNA sequence : 
ATGAGAAAAAGTTCGCACTTGATTTTAAGCTCAATAGTCAGTTTGGCACTCGTAGGGGTCACACCATTGAGTGTTCTTGC
AGATTCCAAACAAGATATTAATCAGTATTTTCAAAGCTTGACTTACGAGCCACAAGAGATTCTTACAAATGAGGGAGAAT
ACATTGATAATCCGCCAGCAACAACTGGTATGTTAGAAAACGGACGTTTTGTAGTACTTCGCAGAGAAAAGAAGAATATT
ACGAACAATAGTGCAGATATTGCTGTTATTGATGCTAAGGCTGCAAATATTTATCCAGGTGCTTTATTGCGTGCTGACCA
AAATCTTCTGGATAATAATCCAACGCTTATCAGTATTGCGCGGGGAGATCTGACGCTTAGTTTGAATTTACCTGGTTTGG
CCAATGGGGATAGCCACACTGTTGTAAATTCTCCAACAAGAAGTACTGTTCGAACAGGGGTGAATAACCTTCTGTCTAAA
TGGAATAATACGTATGCTGGAGAGTATGGCAATACCCAAGCAGAGCTTCAATATGATGAAACAATGGCATACAGTATGTC
ACAATTGAAAACGAAGTTCGGAACCTCTTTTGAAAAAATTGCTGTACCATTAGATATCAATTTTGATGCCGTGAATTCGG
GTGAAAAACAGGTTCAGATTGTTAACTTTAAACAAATTTATTATACAGTTAGTGTTGATGAACCAGAATCTCCAAGCAAG
CTTTTTGCAGAAGGGACAACTGTAGAAGATTTGAAACGAAATGGGATAACAGATGAGGTACCTCCTGTTTATGTTTCCAG
CGTTTCTTATGGACGCTCTATGTTCATCAAGTTAGAAACTAGCAGTAGGAGTACCCAAGTTCAAGCCGCATTTAAAGCAG
CCATCAAAGGCGTTGATATTAGTGGCAATGCTGAGTATCAAGACATTCTGAAAAATACTTCATTCTCTGCTTATATTTTT
GGTGGGGATGCAGGTAGCGCGGCTACTGTTGTGAGCGGAAATATTGAAACACTGAAGAAGATTATTGAAGAAGGTGCAAG
ATACGGAAAACTCAATCCAGGTGTTCCGATTTCGTATTCAACCAACTTTGTCAAAGACAATAGACCTGCTCAGATTTTGA
GCAATTCAGAGTACATAGAAACAACTTCAACAGTCCATAATAGCAGTGCATTGACATTGGATCATTCAGGTGCTTATGTT
GCGAAATACAACATTACTTGGGAAGAAGTATCTTACAATGAAGCTGGAGAAGAAGTTTGGGAACCAAAAGCTTGGGATAA
GAATGGTGTAAATCTGACCTCACACTGGAGTGAAACCATTCAAATTCCAGGAAATGCTCGCAATCTTCATGTCAATATTC
AAGAATGTACAGGATTAGCATGGGAGTGGTGGAGAACAGTTTATGACAAAGATTTACCACTTGTTGGTCAACGTAAAATA
ACCATCTGGGGAACAACGTTATACCCACAGTATGCGGATGAGGTGATAGAGTAA

Protein sequence : 
MRKSSHLILSSIVSLALVGVTPLSVLADSKQDINQYFQSLTYEPQEILTNEGEYIDNPPATTGMLENGRFVVLRREKKNI
TNNSADIAVIDAKAANIYPGALLRADQNLLDNNPTLISIARGDLTLSLNLPGLANGDSHTVVNSPTRSTVRTGVNNLLSK
WNNTYAGEYGNTQAELQYDETMAYSMSQLKTKFGTSFEKIAVPLDINFDAVNSGEKQVQIVNFKQIYYTVSVDEPESPSK
LFAEGTTVEDLKRNGITDEVPPVYVSSVSYGRSMFIKLETSSRSTQVQAAFKAAIKGVDISGNAEYQDILKNTSFSAYIF
GGDAGSAATVVSGNIETLKKIIEEGARYGKLNPGVPISYSTNFVKDNRPAQILSNSEYIETTSTVHNSSALTLDHSGAYV
AKYNITWEEVSYNEAGEEVWEPKAWDKNGVNLTSHWSETIQIPGNARNLHVNIQECTGLAWEWWRTVYDKDLPLVGQRKI
TIWGTTLYPQYADEVIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hly AAA69525.1 listeriolysin O Virulence LIPI-1 Protein 2e-110 46
slo YP_281505.1 streptolysin O Virulence Not named Protein 1e-85 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSUJS14_1378 YP_006076709.1 hemolysin VFG1363 Protein 4e-117 51
SSUJS14_1378 YP_006076709.1 hemolysin VFG0074 Protein 1e-110 46
SSUJS14_1378 YP_006076709.1 hemolysin VFG2275 Protein 2e-95 42
SSUJS14_1378 YP_006076709.1 hemolysin VFG0976 Protein 5e-86 41