Gene Information

Name : SCATT_03280 (SCATT_03280)
Accession : YP_006052221.1
Strain : Streptomyces cattleya NRRL 8057
Genome accession: NC_017586
Putative virulence/resistance : Virulence
Product : two-component systen response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 380085 - 380768 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence :
ATGAACGACGGGGCGAAGGTGCTGGTCGTCGACGACGACCCGGAGGTGCGGGCGGCCGTCGAGGACGGGCTGGCGGTGGC
CGGGTACGCGGTGCGCGGCGCCGGCGACGGGCTGGCCGGCCTCAGCGAGCTGGCCGCCTGGCAGCCGGACGCCGTCGTGC
TGGACGTGATGATGCCGGTGCTGGACGGCCTCGCGGTCTGCCGCCGGCTGCGCGCGCTGGGCGACCGCACCCCGATCCTG
ATCCTCACCGCCCGCGACTCGGTGCACGACCGGGTGGACGGGCTGGACGCCGGTGCCGACGACTACCTGGTCAAGCCGTT
CGCCCTGGACGAGCTGGCGGCCCGGCTGCGCGCCCTGCTGCGCCGCGCCGCCCCCGCCCCGGAGGAGGGTGTGTACCGGT
ACGGCGACCTGGTGGCCGATCCGGCGAGCCGCACCGGGGCCCGCGGCGGCCGGCCGCTGGAGTTCACCCGTACCGAGTTC
GCCCTGCTCGAAGTCCTCATGGAGCACCCGGGACAGGTGCTGCCCCGTGAGGTGATCATGGCACGGGTGTGGGGCGCGGA
CTTCGGCCCGCACTCCAACTCCCTTGCCGTGTACGTCGGTTACCTGCGCCGCAAGCTCGAAGCGGGCGGCGAGCCGCGCA
TCGTGCACACCGTGCACGGGGTGGGGTACCGGCTGGGCGGGTGA

Protein sequence :
MNDGAKVLVVDDDPEVRAAVEDGLAVAGYAVRGAGDGLAGLSELAAWQPDAVVLDVMMPVLDGLAVCRRLRALGDRTPIL
ILTARDSVHDRVDGLDAGADDYLVKPFALDELAARLRALLRRAAPAPEEGVYRYGDLVADPASRTGARGGRPLEFTRTEF
ALLEVLMEHPGQVLPREVIMARVWGADFGPHSNSLAVYVGYLRRKLEAGGEPRIVHTVHGVGYRLGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCATT_03280 YP_006052221.1 two-component systen response regulator BAC0083 Protein 6e-36 45
SCATT_03280 YP_006052221.1 two-component systen response regulator HE999704.1.gene1528. Protein 6e-36 44
SCATT_03280 YP_006052221.1 two-component systen response regulator BAC0197 Protein 2e-30 43
SCATT_03280 YP_006052221.1 two-component systen response regulator BAC0125 Protein 2e-31 42
SCATT_03280 YP_006052221.1 two-component systen response regulator BAC0111 Protein 3e-34 42
SCATT_03280 YP_006052221.1 two-component systen response regulator BAC0638 Protein 8e-27 42
SCATT_03280 YP_006052221.1 two-component systen response regulator Y16952.3.orf35.gene. Protein 4e-24 41
SCATT_03280 YP_006052221.1 two-component systen response regulator BAC0347 Protein 1e-29 41
SCATT_03280 YP_006052221.1 two-component systen response regulator U82965.2.orf14.gene. Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCATT_03280 YP_006052221.1 two-component systen response regulator VFG1390 Protein 6e-52 56
SCATT_03280 YP_006052221.1 two-component systen response regulator VFG1389 Protein 5e-39 48
SCATT_03280 YP_006052221.1 two-component systen response regulator VFG1386 Protein 3e-34 44
SCATT_03280 YP_006052221.1 two-component systen response regulator VFG0596 Protein 4e-30 42