Gene Information

Name : F11_14830 (F11_14830)
Accession : YP_006049225.1
Strain : Rhodospirillum rubrum F11
Genome accession: NC_017584
Putative virulence/resistance : Virulence
Product : ABC-3 transporter component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3336136 - 3336996 bp
Length : 861 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence :
ATGATGGCCCTGCTCGCCCAGCCGTTCGCCTATGACTACATGATCAACGCCATGTGGGTGAGCGCCCTGGTCGGCGGCGT
CTGCGCCTTTTTGTCGTGCTTCCTGATGCTCAAGGGCTGGTCGCTGATCGGCGACGCCCTGTCCCATGCCATCGTGCCCG
GCGTCGCCGGGGCGGCGATCATCGGCCTGCCGTTTTCCGTCGGCGCCTTTCTGGCCGGTGGGCTGGCGGCGGGGGCCATG
CTGTTTCTCAACCGGCGAACGCGGCTGAAGGAAGACGCGATCATCGGCCTGATCTTCACCTCGTTCCTCGGGTTGGGATT
GTTCATGATCTCGCTCGATCCGGCCTCGGTGAACGTCCAGACCATCGTGCTGGGCAATATCCTGGCGATCACCCGGGGCG
ATACCCTGCAGTTGGTGCTGATTTCAGGGATTTCCTTGGCCGTTTTGCTGGCCAAATGGAAAGATCTGATGGTCGCCTTC
TTCGATGAAAGCCATGCCCGCTCGGTCGGGCTCAATCCGGCGCTGCTGAAGGGCGTTTTCTTCACCCTGCTCAGCGCCTG
CACGGTGGCCGCCTTGCAGACCGTGGGCGCCTTCCTGGTCATCGCCATGGTGGTCACCCCCGGGGCCACCGCCTATCTGC
TGACCGACCGTTTTCCCCGACTGATCGTCCTGAGTGTTGGCCTGGGCGTGCTCAGTTGTCTGATCGGCACCTATCTCAGT
TTCTTCCTGGATGGGGCGACCGGCGGGGTGATCGTGGTTTTGCAGACCCTGGTCTTCCTGCTCGCCTTTTTGTTCGCCCC
CAAGCACGGGCTGCTGGCCGCCCGCTTGCGGGGACGCCGCATGCGGGAGGCCGGCCGATGA

Protein sequence :
MMALLAQPFAYDYMINAMWVSALVGGVCAFLSCFLMLKGWSLIGDALSHAIVPGVAGAAIIGLPFSVGAFLAGGLAAGAM
LFLNRRTRLKEDAIIGLIFTSFLGLGLFMISLDPASVNVQTIVLGNILAITRGDTLQLVLISGISLAVLLAKWKDLMVAF
FDESHARSVGLNPALLKGVFFTLLSACTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLIVLSVGLGVLSCLIGTYLS
FFLDGATGGVIVVLQTLVFLLAFLFAPKHGLLAARLRGRRMREAGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-73 73
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-73 73
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-73 73
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-73 73
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-73 73
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-34 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-34 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-34 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-34 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
F11_14830 YP_006049225.1 ABC-3 transporter component BAC0351 Protein 2e-73 73
F11_14830 YP_006049225.1 ABC-3 transporter component BAC0441 Protein 3e-66 66
F11_14830 YP_006049225.1 ABC-3 transporter component BAC0352 Protein 8e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
F11_14830 YP_006049225.1 ABC-3 transporter component VFG0527 Protein 2e-73 73
F11_14830 YP_006049225.1 ABC-3 transporter component VFG0528 Protein 7e-35 43