Gene Information

Name : F11_14825 (F11_14825)
Accession : YP_006049224.1
Strain : Rhodospirillum rubrum F11
Genome accession: NC_017584
Putative virulence/resistance : Virulence
Product : ABC-3 transporter component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3335282 - 3336139 bp
Length : 858 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGACCGGATCCTGGCTGGAAACCCTGCTGCTACCCTTTACCGTGCCCTTCCTGCGCGATGCGATGATCATCGCCCTGCT
GGTCGCCGTGCCGACCGCCCTGCTGTCGTGTTTCCTGGTGCTCAAGGGCTGGGCCCTGATGGGCGACGCCATCTCGCATG
CTGTGCTACCCGGGGTGGTTCTGGCCTATGTGGCCGGCCTGCCCTTGGGGGTGGGGGCTTTCGCCGCCGGTCTGGGCTGC
GCCCTGGTGACGGGCTATCTGAAGGATAACAGCCGCATCAAGCAAGACACGGTGATGGGAGTGGTGTTTTCGGGCATGTT
CGGCCTAGGCATCGTGCTCCATACCAGCATCCGCACCGATGTTCACCTTGATCACATCCTGTTTGGCGACATGCTGGGGG
TCGGATCCTCCGATCTGCTGGAAAGCGGCCTGATCGCCCTGCTGGTGGTCGGCGCCATCGCGCTCAAGGGCCGCGACCTG
CTGCTCCACGCCTTTGATCCCCAACAGGCCCGCGCCATCGGCCTGCCTGTCGGCCTGTTGCACTACGGCTTGCTCTGTCT
GCTCGCCCTGACCATCGTCGGCGCCTTGAAGGCGACGGGGATCTTGCTGACCGTCGCCTTGCTGATCGGGCCGGGCGCCA
TCGCCTTTTTGTTCACCCGGCGGTTTTCATCGATGCTGCTGGCCGCCGTGGTGATTTCGAGTCTCGCCTCGGTCCTCGGC
GTCTATATCAGCCTGTTCCTAGACAGCGCCCCGGCGCCGACCATCGTTTTGCTGCTGACCTTGACCTTCATCGCCGCCTT
CATGGTCTCGCGCCAGCGCGACCGCCAACGGGCCCGGGGCGTCGATCGTCCCGTGTGA

Protein sequence : 
MTGSWLETLLLPFTVPFLRDAMIIALLVAVPTALLSCFLVLKGWALMGDAISHAVLPGVVLAYVAGLPLGVGAFAAGLGC
ALVTGYLKDNSRIKQDTVMGVVFSGMFGLGIVLHTSIRTDVHLDHILFGDMLGVGSSDLLESGLIALLVVGAIALKGRDL
LLHAFDPQQARAIGLPVGLLHYGLLCLLALTIVGALKATGILLTVALLIGPGAIAFLFTRRFSSMLLAAVVISSLASVLG
VYISLFLDSAPAPTIVLLLTLTFIAAFMVSRQRDRQRARGVDRPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-66 63
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-66 63
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-66 62
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-66 62
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-66 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
F11_14825 YP_006049224.1 ABC-3 transporter component BAC0352 Protein 2e-66 63
F11_14825 YP_006049224.1 ABC-3 transporter component BAC0442 Protein 1e-55 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
F11_14825 YP_006049224.1 ABC-3 transporter component VFG0528 Protein 1e-66 63