Gene Information

Name : Spith_1280 (Spith_1280)
Accession : YP_006045262.1
Strain : Spirochaeta thermophila DSM 6578
Genome accession: NC_017583
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1431057 - 1431737 bp
Length : 681 bp
Strand : -
Note : PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sta:STHERM_c12420 lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter-like; SMART: ATPase,

DNA sequence : 
ATGAGTGATCCGATCATCGTCCTTGAGGAAGTGGTGAAGGAGTATCCCTCCGGAGAGACATCCCTCCGTGTGCTGGACGG
GGTCTCGGGCGGTTTCGAGAGGGGGAAGGTCCATGTGATCATGGGTGAGAGTGGATCGGGGAAGAGCACCCTCCTCCACC
TCATAGGGGGGCTCGACACCCCCACATCGGGGCGCGTACTTCTTGAAGGTCAGGACATGGGCGCCCTCGACGAGGAGGCG
CTCGCGGCCTTCCGGCAGCGAGACATGGGGTTCGTCTTCCAGATGCACTACCTCCTCCGGGAGTGTACCTCCCTGGAGAA
CGTCCTCCTCCCCGCATATATGGCCGGGCTCTCCTTTTCTGAGGCGGCTGCGAAGGCTCGGGATCTCCTCGTGAGGGTGG
GGCTCGGAGACAGGATGCACCACTACCCCTCCCAGCTTTCCGGCGGGGAACGACAGAGGGTGGCCATTGCACGGGCCCTG
GTGAACGGCCCACGTATCGTCCTCGCCGACGAGCCCACCGGCAACCTGGACGAGCGCACGTCCCGCATGGTGGAGGATGT
GTTCTTCTCCCTCGTCCGGGAAGAGGGGGCCACGCTCATCCTCGTGACCCACGATGCCGCCCTCGCCTCTCGGGCCGACA
CCGTCTACCGCCTTGAGGGGGGGAGGCTCCATCGGTCATGA

Protein sequence : 
MSDPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEA
LAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARAL
VNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAALASRADTVYRLEGGRLHRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-25 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spith_1280 YP_006045262.1 ABC transporter NC_012469.1.7686878. Protein 2e-38 48
Spith_1280 YP_006045262.1 ABC transporter NC_008702.1.4606598. Protein 6e-27 43
Spith_1280 YP_006045262.1 ABC transporter CP001581.1.gene798.p Protein 2e-34 42
Spith_1280 YP_006045262.1 ABC transporter CP001581.1.gene598.p Protein 1e-32 41