Gene Information

Name : Sbal117_0083 (Sbal117_0083)
Accession : YP_006035380.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : two component Fis family sigma54-specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 94521 - 95903 bp
Length : 1383 bp
Strand : +
Note : KEGG: shw:Sputw3181_0075 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduct

DNA sequence : 
ATGAGCCAGATAGATAATAACCTCAAGCCTCTTCCATCGGCAGTATCGGTACTGATTGTTGATGATGAACCCGGAATGCG
CAGTTTTTTAAATAAGGCACTCTCGAAAAAATTCGCCTTAGTCGAAACAGCAGGCAGTATCGAAGATGCGGAGCAGCTAC
GTAGCCGCTGCCATTTCGATTTGCTGATCGTCGACATTCGCTTGCCAGGCCGCTCAGGTATCGAATGGCATGAAGCGCTT
GATGAGCAGGGTCGTCGTTCGGACATCATTTTTATGACCGGCTATGCCGACATGGAAGTGGCGATTACTGCGCTGCGCGC
GGGTGCGTCTGACTTCATCATGAAACCTTTCCACCTTGAGCAGATGATGACAGCGGTCGATCGTTGTATCGAACGTCGCC
TGCTTAAACGTGAAAACTTGATGCTGCGCCGTGAGGTTTCAATCGGTTACTCATCGACCATAATTGGCAGCAGTGAGGCC
ATGAAGTCGGTGAAACATATTATCGAACGTGTGGCGCCGACCAATGCCGTGGTGTTGATCCAAGGTGAGTCGGGCACGGG
TAAGGAATTAGTTGCACGGCAATTACATTTGCTCAGTGGACGTCAGGGACCTTTTGTCCCGGTCAACTGTGGCTCTATCG
CTCCTGAATTGCTCGAAAGTGAGCTGTTTGGTCATACCGCAGGTGCATTTACGGGTGCGAAAGGCAATCGTGAAGGTTTA
TTCAGTTTTGCCTCGGGCGGGACGATTTTCCTCGATGAAATTGGCGAAATGCCACTGAAAATGCAAACGGCATTGCTCAG
AGTATTAGAGCAAAAAGCGATTCGCCCAGTGGGCAGCGAGAAAGAAGTGAACATCGATGTGCGAGTGATCGCGGCCACCA
ACCGCACTCTGATTGATGAAGTGGATGCGGGGAATTTCCGCCGTGACTTATATTATCGACTGAATGTGCTCGATATTTTA
ATCCCGCCATTACGTGACAGACCCGAAGATGTGGTCGAGTTAACCCATCACTTCACCCGTCAACTCGCCGCCGAATTAGG
GGTTAGAGAAGTCGTGTGGAGCCATGAGGACATGGTGAAGTTGCAACAACACGAGTGGCCAGGCAATATTCGCGAGCTGC
GCAATATGATTGAGCGCTGTATTTTGCTGGGCAAACCGCCGGCGGAATATTGGAAACAACAGCTGAAGAGTGAGTCTTTA
TCGACATCGGGTTACCCATTGGATTGGCCATTAAAAGAAGTCGAAAAACACCATGTGACCAGCGTTGTGGACTTACATTC
TGGCAATAAGTCTGCCGCAGCGAGGGATTTAGGCGTTTCGCGTAAAACTTTAGATCGTAAGTATAAAGAGTGGTTTGATT
TCAGCGGCGATCAGGAGTCATAG

Protein sequence : 
MSQIDNNLKPLPSAVSVLIVDDEPGMRSFLNKALSKKFALVETAGSIEDAEQLRSRCHFDLLIVDIRLPGRSGIEWHEAL
DEQGRRSDIIFMTGYADMEVAITALRAGASDFIMKPFHLEQMMTAVDRCIERRLLKRENLMLRREVSIGYSSTIIGSSEA
MKSVKHIIERVAPTNAVVLIQGESGTGKELVARQLHLLSGRQGPFVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGL
FSFASGGTIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLIDEVDAGNFRRDLYYRLNVLDIL
IPPLRDRPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQQHEWPGNIRELRNMIERCILLGKPPAEYWKQQLKSESL
STSGYPLDWPLKEVEKHHVTSVVDLHSGNKSAAARDLGVSRKTLDRKYKEWFDFSGDQES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-62 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-62 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_0083 YP_006035380.1 two component Fis family sigma54-specific transcriptional regulator BAC0089 Protein 2e-67 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_0083 YP_006035380.1 two component Fis family sigma54-specific transcriptional regulator VFG1214 Protein 1e-67 42