Gene Information

Name : Sbal117_4139 (Sbal117_4139)
Accession : YP_006039289.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : Fis family sigma-54 specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4769451 - 4770752 bp
Length : 1302 bp
Strand : -
Note : KEGG: shw:Sputw3181_0461 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core

DNA sequence : 
GTGGGTGGCCTAAGTATACGGATTGAAGGATTAAACATATCTGCGGAACTTGCATGCACAATCGCACAGGGAGATTTTTA
TCTGTGGAATGATGCAATGGAGTCGTCTTGGCTCACGATCGTTAACTTATCAGATTGTCGTCCTTGTGATGTAAAATCTT
ATCTTGCCCGTTTTCCTTGCCGTAATATTGTCGCGTTATTAGCGCCAGAACAAGGTGAGTTAGCCGCGGCGGCAATGCGT
GCTGGTGTACAAGATTATCTATTAATTCCCGTAGAAACCGAGCAACTGCTAGCCTCAATACAACGTTTACGCCGTTTAGA
GTTACCTGATTCTAGTTTGGTTGTATCGGCTGCTGTTAGCCGGCAACTATTGATGTTGGCCCATAGGGCAGCAACCACTG
AGGCCAGTGTTTTATTATTGGGTGAAAGTGGTACTGGCAAGGAGCCGCTTGCTCGTTATATTCATCGTCATTCTTCTCGT
TCTCATAAGCCTTTCGTTGCGATTAACTGCGCCGCCATCCCTGAAAGTATTCTTGAATCTGTCTTATTTGGTCATGTTAA
AGGCGCCTTTACTGGTGCTATTTGCGATAAAGCAGGCAAATTTGAGCAGGCAAATGGCGGCACTTTATTACTCGATGAAA
TTGGTGAAATGCCCTTGCCGTTGCAGGCAAAATTACTCCGAGTGTTACAGGAGCGTGAAGTCGAAAGACTCGGCGGGCAG
CATGCTATTCCACTGGATATCAGAATCATTGCCTCTACCAATCGCGACTTAAGACAGGCCGTTGAGTTTGGGCATTTTAG
GGAGGATCTGTTCTACCGTTTAGATGTTTTGCCTTTAAAAATCGCGCCTTTAAGAGAACGTAAGGCTGACATCCTCCCTT
TAGCTGAGCATTTCTTAGGTTTATATGGTCAGTCCGATAACGCAAGTCGTTGCTATTTCAGTGAGCACGCAAGGCAAGTG
CTTGTTACCTATGATTGGCCGGGAAATGTTAGAGAGCTAGAAAATTGTATTCAGCGGGCATTAGTGATGCGCAGAGGTCA
GGCTATTCAAGTTGCTGAACTCGGATTAAACATTCAAGAAGAAACGCTCGAGTTAGAGCCTTTGGGCGCGACGGTAGGAC
TTAAAGCTTCAAAACAGCAGGCAGAATTTCAATATATTATTGATGTACTTAAACGTTTTAATGGACAACGCACTTTAAGT
GCGCAGGCGCTAGGGATGACGACTAGAGCCTTAAGATATCGCCTCGTGCAAATGCGAGAAGCAGGGATTGATATTGAAAC
GTTATTAGATCAAGCAGCGTGA

Protein sequence : 
MGGLSIRIEGLNISAELACTIAQGDFYLWNDAMESSWLTIVNLSDCRPCDVKSYLARFPCRNIVALLAPEQGELAAAAMR
AGVQDYLLIPVETEQLLASIQRLRRLELPDSSLVVSAAVSRQLLMLAHRAATTEASVLLLGESGTGKEPLARYIHRHSSR
SHKPFVAINCAAIPESILESVLFGHVKGAFTGAICDKAGKFEQANGGTLLLDEIGEMPLPLQAKLLRVLQEREVERLGGQ
HAIPLDIRIIASTNRDLRQAVEFGHFREDLFYRLDVLPLKIAPLRERKADILPLAEHFLGLYGQSDNASRCYFSEHARQV
LVTYDWPGNVRELENCIQRALVMRRGQAIQVAELGLNIQEETLELEPLGATVGLKASKQQAEFQYIIDVLKRFNGQRTLS
AQALGMTTRALRYRLVQMREAGIDIETLLDQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 1e-40 42
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 2e-42 41
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 2e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_4139 YP_006039289.1 Fis family sigma-54 specific transcriptional regulator BAC0467 Protein 3e-62 42
Sbal117_4139 YP_006039289.1 Fis family sigma-54 specific transcriptional regulator BAC0089 Protein 1e-55 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_4139 YP_006039289.1 Fis family sigma-54 specific transcriptional regulator VFG1249 Protein 1e-78 49
Sbal117_4139 YP_006039289.1 Fis family sigma-54 specific transcriptional regulator VFG0116 Protein 2e-54 43