Gene Information

Name : Sbal117_4134 (Sbal117_4134)
Accession : YP_006039284.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4764355 - 4765692 bp
Length : 1338 bp
Strand : -
Note : TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: shw:Sputw3181_0466 FliI/YscN family ATPase; SMART: ATPase

DNA sequence :
TTGGAGTCTGATGTATTTCATGACGATTGGCCTCAGGTTCCAGTTGCAAGGGTTTATGGACGTCTCATTCGAGTCAATGG
TTTGTTGCTTGAGGCCGTTGGCTGTCAGCTTGGCATGGGTGACAGTTGTCAGATTGAAGGGCGAAATGGGCGTTTAATTG
AGGCAGAAGTTGTTGGTTTTCACCGTGACGTATTGTGCCTTATGCCGATTGAGCCTACACAGGGCTTGATGCCAGGCGCC
AGAGTGCTACCTATTACGGATGAGCAAACGATAGCTATCGGTGATGGATTGCTTGGTAGGGTGCTTGATGGGCTTGGGCA
GCCACTAGACTCACTGGGCGACCTCACTGACATTTCACAAGTTCCGCAATCCCATACGAGTTACAACCCTTTGCTGCGCC
AGCCTATCCGTCAGCCGCTTGATGTGGGGATCCGTGCCATTAATAGTCTGTTGCCCATTGGCAGAGGTCAGCGACTTGGG
CTCTTTGCGGGCTCGGGTGTGGGTAAGAGTGTGTTATTAGGCATGATGACCCGCTTTACTGAGGCCGATGTCGTGGTGGT
TGGCCTGATTGGTGAGCGTGGTCGTGAAGTTAGAGAGTTTATTGAAGAAACACTCGGTGAAGAAGGGCGTAAACGCGCCG
TGATTATCGCAGCTCCTGCGGATACCACACCGCTGATGCGATTACGTGCTATGCGGTTATCCCACTCCATTGCCTGTGCT
TTTAGAGATCAAGGTAAGCAAGTGTTGCTATTAGTCGACTCATTGACTCGTTATGCTCAGGCACAGCGTGAAATCGCCCT
GAGTCTAGGTGAGCCACCTGCAACCAAAGGCTATCCGCCATCGGCATTTGCACAGTTACCTAGACTGGTTGAAATGGCGG
GTAATGGTGAGCACCCAACGGGAACGCTAACCGCGTTTTATACCGTATTGGCCGAGGGTGATGATCAGCAGGACCCTGTT
GCTGACGCAGCTAGAGCCATTTTAGATGGCCATATAGTGCTAAGTCGTAAATTAGCCGAGCAAGGACATTTTCCAGCGAT
TGATATTAATGCGTCAGTGAGTCGCTTAGCCATGCACATAGCGACTTCTAGCAGCATTGAACAAAGTCAGATCTTTAGAC
ATCTTTTGAGCCGTTACAATGAGGTCAGAGACTTATTACCATTAGGTGGTTACCAAGCTGGCCAAGATCCTGAAATGGAT
CTTGCCGTGCGAGTGTATCCGGAGATGGCGCGATTTTTACGCCAGACCACGCATAGTAAAGTCAATCTGGCTGAGAGCTT
AGCGCAATTAGAACAGTTGATGGGAGTGATGGGATATGAGCCAGCGTCCTCTCTCTAA

Protein sequence :
MESDVFHDDWPQVPVARVYGRLIRVNGLLLEAVGCQLGMGDSCQIEGRNGRLIEAEVVGFHRDVLCLMPIEPTQGLMPGA
RVLPITDEQTIAIGDGLLGRVLDGLGQPLDSLGDLTDISQVPQSHTSYNPLLRQPIRQPLDVGIRAINSLLPIGRGQRLG
LFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVREFIEETLGEEGRKRAVIIAAPADTTPLMRLRAMRLSHSIACA
FRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPRLVEMAGNGEHPTGTLTAFYTVLAEGDDQQDPV
ADAARAILDGHIVLSRKLAEQGHFPAIDINASVSRLAMHIATSSSIEQSQIFRHLLSRYNEVRDLLPLGGYQAGQDPEMD
LAVRVYPEMARFLRQTTHSKVNLAESLAQLEQLMGVMGYEPASSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-70 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-70 48
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-79 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 4e-70 46
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-70 46
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-70 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-77 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 6e-67 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-71 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-71 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-76 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-76 45
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-67 45
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-67 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 5e-77 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 8e-69 45
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-76 45
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-76 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-77 45
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-77 45
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-76 45
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-77 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 8e-68 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-70 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-69 43
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-63 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-63 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 8e-67 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-67 42
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 8e-68 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG1254 Protein 9e-113 60
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG2499 Protein 4e-106 55
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG2331 Protein 7e-103 54
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG0192 Protein 3e-76 47
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG0515 Protein 2e-70 46
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG0390 Protein 2e-75 46
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG2144 Protein 5e-76 45
Sbal117_4134 YP_006039284.1 FliI/YscN family ATPase VFG0048 Protein 5e-76 42