Gene Information

Name : Sbal117_0396 (Sbal117_0396)
Accession : YP_006035687.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 436580 - 437257 bp
Length : 678 bp
Strand : +
Note : KEGG: shw:Sputw3181_0251 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region

DNA sequence : 
ATGAAAATACTTTTAGTTGAAGATGATGCGACGACGATTGATTACATCGTCAAAGGATTTCTTGAGCAGGGCCACAATAT
CGAAACGGCGAGCGATGGCCACCAAGGTCTGTCACTCGCCACGAGTAGTCAGTACGATCTCGTGATCCTCGACCGCATGT
TACCCCAGCTCGATGGCTTAAAATTACTGGCCGCCTTACGGGCAACGGGCAATCAAACCCCAGTGCTGATTTTATCTGCC
TTAGCGCACGTTGATGAGCGAGTGAAAGGCCTGCGCGCGGGCGGCGACGACTATATGACTAAGCCGTTTGCCTTCTCTGA
GTTATTAGTGCGCGCTGAAAAACTCATGCACCGTGGTCAATCTGTGCCAGTCACCACAGATCTTGTTGTCGGTGGTTTGA
AGATGGAGTTACTGACCCGTAATGTGACCTTAGACGGGCAAGAGTTGATGCTGCAGCCAAAAGAGTTCCAGTTACTTAAG
TATCTAATGGAACATGCGAATCAAGTGATTAGCCGCACCTTGTTGTTCGAAGCGGTGTGGGATTATCATTTCGACCCACG
CACGAACGTTATCGATGTGCATATCGCAAAATTACGCCGTAAATTTGAAGAGTTAGGCCATGGCGAGCTTATCGAAACCG
TGAGGGGAGCGGGTTATCGCTTACGACAAAGGCATTAA

Protein sequence : 
MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKLLAALRATGNQTPVLILSA
LAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQSVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLK
YLMEHANQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-43 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0083 Protein 8e-43 45
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-45 44
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0197 Protein 9e-40 43
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0111 Protein 1e-47 43
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-38 43
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0308 Protein 3e-43 42
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator VFG0596 Protein 4e-44 46
Sbal117_0396 YP_006035687.1 winged helix family two component transcriptional regulator VFG1389 Protein 2e-36 43