|
Name : Sbal117_2950 (Sbal117_2950) Accession : YP_006038135.1 Strain : Shewanella baltica OS117 Genome accession: NC_017579 Putative virulence/resistance : Virulence Product : two component Fis family sigma54-specific transcriptional regulator Function : - COG functional category : - COG ID : - EC number : - Position : 3404203 - 3405582 bp Length : 1380 bp Strand : + Note : KEGG: shm:Shewmr7_1424 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transductio DNA sequence : ATGAGTGTGCCCAATTCCATCCAAGATTATTCTGTTCTCATCATCGACGATGAGCCACACATAGGCACAGTTCTCGTTCA GCTATTTGAACTTGAGGGCATTAAGGCGCTCGCCACCACAGAGCCTAAAGGGATCGCTAAGCACCTGCATAAAGATTGGG CGGGAATGGTGATATCAGATGTCAACATGCCGCAATTAGATGGCATCAGCTTAATGCAACAAATCCGCCTGCAGGACCCC GACCTCCCCGTTGTGTTATTGACAGGGTTTGGGGATATCGCCATGGCAGTCAATGCCTTAAAGCAAGGTGCCTACGACTT TCTCGAAAAGCCCTTTAATAACGAGCATATACTCGATGTGGTCAAGCGCGCCTTAGATAAACGCAGCCTGACCCTAGAGA ACCGTAAGCTTAAAAAGGATCTCGAAAGTCAGAGCGTACCAGGCCCTCGCATTTTGGGTAACAGTGTCGGCATCAACCGC ATGCGCCACATCATAGATCAAGTGATAGACACCCCAGCTGATGTGTTAATCGAAGGCGAAACAGGCACAGGTAAAGAGCT CGTCGCCCGCTATTTACACGATCACAGCAGCCGCAGCCAAGCCAACTTTGTCGCCATCAACTGTGGTGCGATCCCTGAAA ACTTAATTGAAAGTGAGCTCTTTGGCGCCGAAGCGGGTGCCTTTACCGGCGTCGATAAGATGCGCATTGGTAAGTTTGAA TACGCCAACGGCGGTACATTATTTTTAGATGAAATTGAAAGTACACCACTGTCGCTGCAAGTAAAACTGCTGCGGGTACT TGAAGATCGTAAAGTTGAACGCTTAGGGTCAAACAAAAGCATCAGCCTTGATATACGGGTAATTGCCGCCACTAAGGTGG ATTTAAAAAGCTTGTGTGACACGGGGGAATTTCGCCAAGACTTGTTGTATCGCTTAAATCTGGTGACTGTACCTATCCCT CCCCTGCGGGATCGCCGTGAGGACATTCCTCTGCTGTTCCTGCACTTTGCACGGGTTGCATCGGCACGCTATCACAAAGC GCTTATCGCCTTAAATGCCGAGCAAAACGCCATACTCTCCTCCCACGACTGGCCGGGCAATGTGCGTGAGTTACGTAATC TCGCCGAACGCTTTGTGCTACTAGGTGGAGAAGCTGCCTTTGCTGGCACTTTGGGCAACACCCCAAGCCTGCACTCGAGT ATGTCCTTACTGCAACGAGTCGAGTTTTTTGAAAGGGTATTGATTGAAGAAGCGCTTAGCCACAACAAGGGCAGCATTAA GCAAACAATGGAGCAGCTGGAACTGCCTCGCAAAACCCTCTACGACAAAATGCGAAAATACGATTTAGACCGCAAGCAGT ACATTAACTCCGATGACTAG Protein sequence : MSVPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKALATTEPKGIAKHLHKDWAGMVISDVNMPQLDGISLMQQIRLQDP DLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHILDVVKRALDKRSLTLENRKLKKDLESQSVPGPRILGNSVGINR MRHIIDQVIDTPADVLIEGETGTGKELVARYLHDHSSRSQANFVAINCGAIPENLIESELFGAEAGAFTGVDKMRIGKFE YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSISLDIRVIAATKVDLKSLCDTGEFRQDLLYRLNLVTVPIP PLRDRREDIPLLFLHFARVASARYHKALIALNAEQNAILSSHDWPGNVRELRNLAERFVLLGGEAAFAGTLGNTPSLHSS MSLLQRVEFFERVLIEEALSHNKGSIKQTMEQLELPRKTLYDKMRKYDLDRKQYINSDD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-52 | 41 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-50 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sbal117_2950 | YP_006038135.1 | two component Fis family sigma54-specific transcriptional regulator | VFG1249 | Protein | 1e-62 | 42 |
