Gene Information

Name : Sbal117_2093 (Sbal117_2093)
Accession : YP_006037324.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : type III secretion protein, YscU/HrpY family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2389306 - 2390355 bp
Length : 1050 bp
Strand : +
Note : KEGG: svo:SVI_2227 type III secretion system EscU protein; TIGRFAM: Type III secretion protein HrpY/HrcU; PFAM: Type III secretion exporter

DNA sequence : 
ATGGCCGAGAAAACAGAAAAACCCACAGAAAAACGCTTACGAGAAGCGAGAAATCGCGGCCAGGTCATTAAAAGTGCAGA
AATCGTCACCGGACTACAGATGGCGATCATTCTCGGGTACTTTCTCTACGAAGGGCCCGCACTCGTTCAAGCCATGATGG
CGTTAATCGACTTAACCATTAATGCCATCAATCTTCCCCTCGAAACAGCGGCCGAACAAATCGTGGGTACCTTCGCCATG
CTGGCATTACGTTTTCTCGGTGGGCTGACATTAGTACTCGTGTTTACCATAGTGGTGGGGAACTCAGTCCAAACAGGCCC
CGTTTGGGCGACTGAGTCTATAATGCCGAGCATGAATAAACTCAATGTTATGAATAATGCTAAGCAACTTATTTCACTGA
AAAGTCTATTCGAGCTCGCTAAAAACCTCGTCAAAGTCACAGTGTTGAGTTTAGTGTTTTACTATCTGCTCCATCGTTAC
GTTAATGCCTTTCAATACTTGCCTCTATGCGAAGAAGCCTGCGGCATCAGTGTGATTTCGACCATGATCACATGGCTCTG
GGGAAGCTTTTTAGGATGCTACTTAATATTTGGGATCGCCGATTATGCATTTCAACGCTATAGCCTAATGAAAGAGCTCA
AAATGTCCAAAGATGACACCAAACAAGAGTACAAAGATTCTGAAGGTAACCCCGAAATGAAACAGAAACGCCGCGAAACA
CAGCGTGAAGTCGCGTCTGGCAGCCTTGCCAATAACGTTCGCAAAGCCACTGTGGTTGTACGAAATCCAACCCATATTGC
CGTGTGTTTGTATTATTGCGAAGGCGAGACACCGTTGCCTAAAGTGCTCGAAAAAGCCGAAGATCACATGGCCTTACACA
TAGTGGCTTTAGCCGAGAAAGCAGGGGTGCCAATAGTTGAGAACATTCCATTGGCACGCGCCTTATTTAAACATGTTGAG
ACTGGAGACGTGATTCCAGAGAGCCTATTTGAACCCGTAGCAGAGCTATTGCGTTTAGTGATGGCTATATCCTATGACAA
TATGAAGTAA

Protein sequence : 
MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTINAINLPLETAAEQIVGTFAM
LALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRY
VNAFQYLPLCEEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRET
QREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEKAGVPIVENIPLARALFKHVE
TGDVIPESLFEPVAELLRLVMAISYDNMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 3e-86 50
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 5e-69 46
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 3e-69 46
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 3e-69 46
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-67 46
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 4e-69 46
unnamed AAL06357.1 EscU Virulence LEE Protein 1e-66 44
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-65 43
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-65 43
escU AAC38372.1 EscU Virulence LEE Protein 2e-67 42
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 3e-68 42
escU AAC31525.1 L0046 Virulence LEE Protein 2e-67 42
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 2e-67 42
escU CAC81850.1 EscU protein Virulence LEE II Protein 7e-68 42
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 3e-67 42
escU AAK26703.1 EscU Virulence LEE Protein 2e-68 42
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 3e-67 42
escU AAL57530.1 EscU Virulence LEE Protein 2e-68 42
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 3e-67 42
escU CAI43886.1 EscU protein Virulence LEE Protein 2e-68 42
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 9e-68 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_2093 YP_006037324.1 type III secretion protein, YscU/HrpY family VFG0522 Protein 2e-69 46
Sbal117_2093 YP_006037324.1 type III secretion protein, YscU/HrpY family VFG0824 Protein 1e-67 42
Sbal117_2093 YP_006037324.1 type III secretion protein, YscU/HrpY family VFG0718 Protein 1e-67 42