Gene Information

Name : Sbal117_2092 (Sbal117_2092)
Accession : YP_006037323.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2388484 - 2389284 bp
Length : 801 bp
Strand : +
Note : KEGG: svo:SVI_2228 type III secretion system apparatus protein, SpaR/YscT family; TIGRFAM: Type III secretion protein SpaR/YscT; PFAM: Type III secretion system inner membrane R protein

DNA sequence : 
ATGACAACTCTGCTGCCCAATCTGTTAACGGCACAACTTCCTGTATTGGCACTCTGTATGATGCGACCATTAGGCATGAT
GCTGTTATTGCCCCTATTCAAAGGCGGGGCTATGGGTAGCGCATTAATCCGTAATAGCCTGATTTTAATGTTTGCTTTAC
CTACTGTGCTGGCAATGGATGAAATGCAGCCGATACTGCAACAGGCCGACACTTGGATGCTCATCAGCCTATTTGGCAAA
GAAATGATTGTAGGCGTGTTACTTGGTTTTTGCGCCGCTATTCCCTTTTGGGCAATAGATATGGCGGGATTTGTGATTGA
CACCATGCGGGGAGCATCCATGTCGACTGTGCTTAATCCCTTGATGGGACTGCAATCATCGATTTATGGCATGCTGTTTA
CTCAAGTTCTGACAGTGCTGTTTTTAGTCTCGGGTGGTTTTAATTTTCTGTTAACCGCACTCTATCAATCCTATCAACAA
CTTCCCCCAGGATTTAATTTAACGCTAGCCCAACCCTTGATGGTGTTTATAGCCCATGAGTGGCAATTGATGTGCCAACT
TTGCCTCAGTTTTGCCATGCCCGCCATGGTGATTATGATCTTAGTCGATGTCGCCTTAGGGCTAGTAAACCGCTCGGCGC
AGCAGTTAAATGTGTTCTTTTTGTCTATGCCCATTAAAAGCGCTTTGGTCTTACTGTTATTAATCTACAGCCTACAGTTT
GCCTTGTCCCATTACCTGCAGACCATTTCTGGGGTAGAGCAGCACGTAGATATTTTGTTTGGACTCTTAGCAGGGCACTA
G

Protein sequence : 
MTTLLPNLLTAQLPVLALCMMRPLGMMLLLPLFKGGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGK
EMIVGVLLGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQ
LPPGFNLTLAQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLSMPIKSALVLLLLIYSLQF
ALSHYLQTISGVEQHVDILFGLLAGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 1e-43 54
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 6e-40 50
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 7e-39 49
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 9e-39 49
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 1e-39 49
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 1e-39 49
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_2092 YP_006037323.1 type III secretion protein SpaR/YscT/HrcT VFG0521 Protein 4e-39 49