Gene Information

Name : Sbal117_2090 (Sbal117_2090)
Accession : YP_006037321.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2387565 - 2388215 bp
Length : 651 bp
Strand : +
Note : KEGG: svo:SVI_2230 type III secretion system EscR protein; TIGRFAM: Yop virulence translocation protein R; PFAM: Type III secretion system inner membrane P protein

DNA sequence : 
ATGACCTTACTCGACCACCCAGTCCAATTGATCATTATGTTGTTTTGCCTGTCACTGCTGCCGCTGTTTGCTGTGATGGG
CACCTCATTCTTGAAATTGGCAATCGTGTTCTCTATGTTACGTAACGCTCTAGGGATCCAGCAGATCCCACCCAATATGG
CAATTTACGGCCTCGCATTAATCCTCACCCTATTCACCATGGCACCTGTGGGGATGGCAATCAATGACAATCTCAAAGCC
ACTCCCATAGTGTTCGATGCGCCCAATGTTTTTGAGCAAATCAACACTGAAGCTATCGCTCCTTACCGCGCGTTTCTCGA
CAAAAACACCAGCAACACTCAGATTGAATTCTTCGCCAATATAGGCCACAAGGTCTGGCCCGAAAAATACCAGCAAGTGC
TGACCAAAGACTCACTGTTAGTCATGGTGCCAGCCTTCACTATGAGTCAGCTCATAGAGGCATTTAAGATAGGTTTACTC
ATCTATCTTCCCTTTGTTGCAATTGATCTTATCGTCTCCAATATTTTACTGGCAATGGGCATGATGATGGTCTCGCCCAT
GACTATAGCGCTACCTTTCAAGTTGTTGATTTTTATCTTGATGGGTGGATGGGAAAAACTGATCAGCCAACTAATGATGT
CATTCTCATGA

Protein sequence : 
MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAINDNLKA
TPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLL
IYLPFVAIDLIVSNILLAMGMMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-64 60
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-59 59
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-60 59
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-59 59
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-59 59
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-59 59
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-56 57
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-56 56
escR AAC31528.1 L0049 Virulence LEE Protein 3e-57 56
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-57 56
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-57 56
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-57 56
escR AAC38369.1 EscR Virulence LEE Protein 2e-56 56
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-57 56
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-57 56
escR AAK26700.1 EscR Virulence LEE Protein 3e-57 56
escR AAL57527.1 EscR Virulence LEE Protein 3e-57 56
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-57 56
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-57 56
unnamed AAL06354.1 EscR Virulence LEE Protein 5e-54 55
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-53 53
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-53 53
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-39 47
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-39 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-39 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-39 46
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-37 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-37 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-40 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-40 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-40 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-40 44
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-40 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-40 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-34 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-34 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-40 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-40 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-36 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG0519 Protein 4e-60 59
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG0715 Protein 1e-56 56
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG0827 Protein 2e-57 56
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG0188 Protein 2e-56 56
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG0394 Protein 4e-54 55
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG0044 Protein 4e-45 48
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG2131 Protein 1e-37 43
Sbal117_2090 YP_006037321.1 Yop virulence translocation R VFG2494 Protein 4e-32 42