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Name : Sbal117_2085 (Sbal117_2085) Accession : YP_006037316.1 Strain : Shewanella baltica OS117 Genome accession: NC_017579 Putative virulence/resistance : Virulence Product : type III secretion protein, HrcV family Function : - COG functional category : - COG ID : - EC number : - Position : 2382264 - 2384321 bp Length : 2058 bp Strand : + Note : KEGG: svo:SVI_2235 type III secretion system apparatus protein, HrcV family; TIGRFAM: Type III secretion protein HrcV; PFAM: Type III secretion system FHIPEP DNA sequence : ATGAACCTCATCAGTCGTTGGTTAAGTAAAGCCGCAGGGCGTCACGATATCATCTTAAGTGCCATGTTAATGGTAGCCGT ATTTATGATGATCTTGCCTCTACCGACACCTTTAGTCGATGTTTTAATTGCCTTAAACCTCGGCTTGTCCATAGTGTTAT TGATGATCGCCATTTACATCCGTGACCCTTTAGAGTTCTCAGTCTTTCCATCCCTACTACTGATCACAACCTTGTACCGT CTGGCACTCACTATCAGCACCAGTCGTTTGATTTTACTGCAGCATGATGCAGGGGATATCGTATATACCTTCGGTAACTT CGTCGTCGGCGGCAATTTAGCGGTCGGAATTATTATCTTTGCTATCATCACCATAGTGCAGTTTATCGTGATTACTAAGG GTTCCGAGCGGGTGGCGGAGGTGAGTGCACGTTTTTCTCTCGATGGAATGCCAGGTAAGCAAATGAGTATTGATGGTGAC ATGCGTGCTGGCATCATTGACGCTAAAGAGGCAAAACGCCAACGTGCGCAAGTTCAGAAAGAAAGTCAGCTCTATGGCGC CATGGACGGCGCGATGAAGTTTGTCAAAGGCGATGCCATCGCCAGCATTATTGTCATTTTAACCAATATCATTGGTGGTA TCGCTGTCGGTGTCATGCAGCACAATATGTCGGCTGCCGAAGCATTAAATACCTATGCAGTCTTATCTGTCGGGGATGGT TTGATAGCCCAAATACCTTCGCTACTGATTTCAGTCACCGCAGGCTTAATCGTGACCCGAGTGCCAGGAGAGCAGAGACA GAACTTAGCCAACGAATTAGTGATGCAAGTAGGACGTCAACCTGCATCATTGCAAATGGCGGGGATCGTGATGTTCATCT TTGCCTTAATCCCAGGTTTCCCAATTTTAGTCTTCGGCACACTCGGTTCGGCCGTCTTAGGGGCTTCATGGTGGTTGACG CGTCAGCAAAAACGAGCGAGTGCTCAAGGGGATGAGAGCCATTTCACCGAAGCAGGTAAAAGTGAGATGACCAATGTCGA CAATATGGCGCCGGGAGCTGTACCGCTGATTTTATATCTTGGTGCCGATGTGCCTATCAATGGGGTTAAAGAAGCACTGC AAAAACTGCGTTGGCAATGGTTTGAGCAATTGGGCGTGCCATTACCGGAAATACAATTACAGATAGCTAAGAAAGGCACC CTAGGCCGCTGTGATGTACTTTTGTACCAAGAGCCCGTATTGCAACTGCAATTAGCACCACAGGAAGTCCTGTTGATTGA CCCCATCGCAACGATTCCATGCCGTGTCGAGTCCATCCCTTTTAGTAATCAAAGATTGCATTGGATCAAAGGTAATGCGC TTGAGCAGGCGGAGGCCCAAGGTTTAGCGGTTTGCCGTGATGAGCAAATTCCTGCTTATGTGATGGGTAAAGTGATCGAC CGCTATGCGGGGGAGTTTATCGGCGTACAAGAAACCCGTTATTTAATGGATGCCATGGAGGCTCGCTACGGTGAGCTAGT CAAAGAACTTCAACGACTGTTGTCTGTGGGGAAGGTCGCCGAGATCCTACAACGCTTAGTCGAAGAGGGGATTTCAGTGC GCGATCTACGGACTATTTTTGAAACCTTAGTCGAATGGGTACCAAAGGAGAAAGACATCATCATGTTAACTGAGTATGTG CGGATTGCGCTTCGCCGCCATATTCGCCGCAAGTTTGCGACCCCACAAGGTTGGATTGCTGTGCTTATGGTCGGAGAAGG AATTGAAAATGTGATCCGTGAATCGATACGACAATCGACAGCCGGCTCTTATTCAGCCTTAGATATGGCGCAAACTCAGC AAATATTAACCTGCATTCAAGAACAGCTGCCACCGGAGCAAACCTGTGTACTGCTGACTTCGCTCGATGTGCGCCGTTAC CTGCGAAAAATCGTAGAACGCGAGTTATTTAGCACACCCGTTTTGTCGTTTCAGGAATTAGGCGACGATGCAGAAATAAA AGTCATAGGCCAAGTGGACTTAGTGGGTGACATGCTCGATGCCGCACTGGCGAGCTAA Protein sequence : MNLISRWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLEFSVFPSLLLITTLYR LALTISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGIIIFAIITIVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGD MRAGIIDAKEAKRQRAQVQKESQLYGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDG LIAQIPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVFGTLGSAVLGASWWLT RQQKRASAQGDESHFTEAGKSEMTNVDNMAPGAVPLILYLGADVPINGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGT LGRCDVLLYQEPVLQLQLAPQEVLLIDPIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVID RYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFETLVEWVPKEKDIIMLTEYV RIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRY LRKIVERELFSTPVLSFQELGDDAEIKVIGQVDLVGDMLDAALAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 6e-177 | 62 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 3e-147 | 54 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 3e-147 | 54 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-147 | 54 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-147 | 54 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 1e-147 | 54 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 3e-143 | 51 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-143 | 51 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 1e-143 | 51 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 1e-143 | 51 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 1e-143 | 51 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 8e-144 | 51 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 8e-144 | 51 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 2e-140 | 51 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 1e-142 | 51 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-139 | 50 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-139 | 50 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 1e-142 | 50 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 1e-142 | 50 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 1e-142 | 50 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 1e-142 | 50 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 8e-129 | 47 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 1e-56 | 43 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-56 | 43 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 8e-97 | 42 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 8e-97 | 42 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 8e-97 | 42 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 8e-97 | 42 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 5e-90 | 42 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-56 | 42 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-56 | 42 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-56 | 42 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-56 | 42 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 4e-56 | 42 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 4e-93 | 41 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 3e-93 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0514 | Protein | 7e-148 | 54 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0729 | Protein | 2e-143 | 51 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0813 | Protein | 6e-143 | 50 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0064 | Protein | 3e-130 | 47 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0198 | Protein | 3e-112 | 46 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0384 | Protein | 3e-128 | 45 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG0557 | Protein | 3e-97 | 42 |
| Sbal117_2085 | YP_006037316.1 | type III secretion protein, HrcV family | VFG1780 | Protein | 9e-98 | 41 |
