Gene Information

Name : Sbal117_2078 (Sbal117_2078)
Accession : YP_006037309.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : type III secretion apparatus lipoprotein, YscJ/HrcJ family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2373898 - 2374617 bp
Length : 720 bp
Strand : +
Note : KEGG: svo:SVI_2241 type III secretion system apparatus lipoprotein; TIGRFAM: Type III secretion system lipoprotein HrcJ/YscJ; PFAM: Secretory protein YscJ/FliF

DNA sequence :

ATGAAATATTTTAAATGGTCAATATTGTTGCTCGTCTTCGCGTTGACTGGGTGCAAAGTCGATCTCTATCGAGATCTTCC
CCAAGATGAAGCGAATCAAATGGTTGCCCTGTTGATGCTCAATCACATAGATGCCAGTGCGGAAGCAGATCAAAAATCAG
GCAATGTGTCTCTAAAAATAGAGAAAGACCAATTTATCAATGCCGTTGAATTACTGAGGCAAAATGGCTTTCCTAAACCT
CATTATGCCAATATCGAGGATTTGTTTCCTTCGGGTCAGTTAGTGACTTCACCCGCCCAAGAGGAAGCGAAAATGGGTTA
TCTAAAAGAGCAGCAACTCGAGCGTACCTTGTCGAGTATGGATGGGGTGATCAGCGCTAGAGTGTCTATTGCCGAACCTG
CACCCGACACCGGGCGTCAGCTTGCACAAACTAAGTCGGCCTCTGTATACATTAAATATTCACCTCAGGCTAACTTAACA
AATACGGAAAATCAGATTAAGAGCTTAGTGCAGAATGCCGTTCCAGGACTGAGCTACGACAATATCAGTGTCTTTTTGCA
AGCCGCAAGTTATCGCTATCAAGCCATTACTCAGCCCACTAGCAGTAGTTCATCCCAATTATTAGCCCAGGTCGAAGCGT
ACAAGTTGCCGTTAGTGATCAGCTTATCGGGAATAATGCTATTCAGCATTGGCGGTATGTGGTGGATGAGACGCAAATAA

Protein sequence :

MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
YPO0263	YP_002345344.1	type III secretion system apparatus lipoprotein	Virulence	Not named	Protein	1e-50	54
ssaJ	CAA12196.1	SsaJ	Virulence	SPI-2	Protein	9e-44	51
ssaJ	NP_456119.1	putative pathogenicity island lipoprotein	Virulence	SPI-2	Protein	1e-43	51
ssaJ	NP_805080.1	pathogenicity island lipoprotein	Virulence	SPI-2	Protein	1e-43	51
ssaJ	CAA70532.1	secretion system apparatus	Virulence	SPI-2	Protein	1e-43	51
ssaJ	YP_216417.1	secretion system apparatus protein SsaJ	Virulence	SPI-2	Protein	2e-43	51
ssaJ	NP_460374.1	needle complex inner membrane lipoprotein	Virulence	SPI-2	Protein	2e-43	51
escJ	ACU09463.1	EscJ protein	Virulence	LEE	Protein	4e-35	46
escJ	AAK26710.1	EscJ	Virulence	LEE	Protein	9e-36	46
escJ	YP_003236093.1	T3SS structure protein EscJ	Virulence	LEE	Protein	5e-35	46
escJ	AAL57537.1	EscJ	Virulence	LEE	Protein	9e-36	46
escJ	NP_290273.1	hypothetical protein	Virulence	LEE	Protein	5e-35	46
escJ	CAC81857.1	EscJ protein	Virulence	LEE II	Protein	9e-36	46
ECs4573	NP_312600.1	EscJ	Virulence	LEE	Protein	5e-35	46
escJ	CAI43879.1	EscJ protein	Virulence	LEE	Protein	9e-36	46
escJ	YP_003223480.1	T3SS structure protein EscJ	Virulence	LEE	Protein	1e-35	46
unnamed	AAL06364.1	EscJ	Virulence	LEE	Protein	4e-35	46
escJ	YP_003232148.1	T3SS structure protein EscJ	Virulence	LEE	Protein	1e-35	46
escJ	AAC38379.1	EscJ	Virulence	LEE	Protein	4e-35	46
escJ	AAC31518.1	L0039	Virulence	LEE	Protein	4e-35	46
escJ	AFO66320.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-33	42
escJ	AFO66410.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-33	42

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Sbal117_2078	YP_006037309.1	type III secretion apparatus lipoprotein, YscJ/HrcJ family	VFG0510	Protein	7e-44	51
Sbal117_2078	YP_006037309.1	type III secretion apparatus lipoprotein, YscJ/HrcJ family	VFG0817	Protein	2e-35	46
Sbal117_2078	YP_006037309.1	type III secretion apparatus lipoprotein, YscJ/HrcJ family	VFG0725	Protein	2e-35	46
Sbal117_2078	YP_006037309.1	type III secretion apparatus lipoprotein, YscJ/HrcJ family	VFG0218	Protein	3e-31	41