Gene Information

Name : Sbal117_2067 (Sbal117_2067)
Accession : YP_006037298.1
Strain : Shewanella baltica OS117
Genome accession: NC_017579
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2365557 - 2366027 bp
Length : 471 bp
Strand : +
Note : TIGRFAM: Type III secretion system, low calcium response, chaperone LcrH/SycD; KEGG: svo:SVI_2254 type III secretion system chaperone, SycD family

DNA sequence : 
ATGAAACAGCAAGAATTTGAAGTCCTTGAACATTTTCTGCAACGGGGCGGCTCACTGCGTATGTTGGCTGATGTCGAGCA
AAGTGACTTGAATGTGCTGTACCAATACGCGTTGCAGTTAATGGCCTGCCGAGACCAACAGGGGGCGAAGCGGATCTTTT
ACCTCTTGATGCGCATAGATCAATGGAATTACGACTACTGCTTTTCTCTAGGGATATGCTGCCAGCAGTTACACGAACAT
GAAGAGGCCATTTTCTGTTTGGGCCGGGCAGGGATGATCAAAGTCGATAATCCTTTACCCGCTTACCATGCTGGTTTGAG
CTACTTGGCTTTGGGCAACCACGACTATGCCAAGAGAAGCTTTAACGCCAGTCTACGTTGGTGTGAAGGCCACCCAGAGA
GCACTGGGATCGCCGCCAGAGCACAGCGCGGACTGGCCACACTCGCGAAGGAGAATTCCCATGTCAATTAA

Protein sequence : 
MKQQEFEVLEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGICCQQLHEH
EEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAARAQRGLATLAKENSHVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 5e-20 43
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 5e-20 43
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 5e-20 43
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 3e-20 43
sscA CAA12186.1 SscA Virulence SPI-2 Protein 3e-20 43
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 7e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal117_2067 YP_006037298.1 type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 1e-20 43