Gene Information

Name : RSPO_c02531 (RSPO_c02531)
Accession : YP_006030361.1
Strain : Ralstonia solanacearum Po82
Genome accession: NC_017574
Putative virulence/resistance : Unknown
Product : isrso6-transposase orfb protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2646656 - 2647444 bp
Length : 789 bp
Strand : -
Note : -

DNA sequence :
ATGAATCTGCAGCATGAACGGATTGACGGCCTATGCTCGCAACTCAAGCTCGACCGTATCGCCAGCGATTGGGGAGCGCT
CGCGCAGCACGCTGCGACGACCGACGCGAGCCTGGCGGACTTCCTGGAGCAACTGCTGCAGGCCGAACTCGGCGCACGCG
AGGAGCGCAAGCGCCAGACGCTCACGAAGCTCGCCTCACTGCCGGGTATCAAGACGCTGGAGCAATATGACTTCGGCTTC
GCCAGCGGTGCCCCGCGAGCGCAGATACAGGAGCTGGCAAGCCTGGCGTTCATCGAGCGCGCCGAGAATGTCGTGCTGCT
TGGGCCATCCGGCGTCGGCAAGACGCACATCGCCAGTGCGCTGGCCTACCGCGCGACGCAGGCGGGCATCAAGACGCGCT
TCATCACGGCCGCCGACCTGATGATGCAACTGGCGACGGCGCGGCAGCAGAACCGCTTGCGGGAGTTCTTCAACCGCGCA
GTCATCGGACCGAGGTTGCTGGTCATCGACGAAATCGGCTATCTGCCGTTCGGGCGTGAAGAGGCAGACCTGTTCTTCAA
CGTCGTCGCCAAGCGTTACGAGCGCGGCGCCATCGTGTTGACGAGCAACCTGCCGTTCACGCAGTGGGCTACGGCGTTCG
CCGACGACCAGACGCTGACGGCGGCCATGCTCGACAGGCTTTTGCATCACGCACACATCGTGCAAATCACCGGCGAGAGC
TACCGGCTCAAGGACAAGCGCAAGGCAGGGCAAACATCCACGCGGGCAAGCATGAAAGCAGCCGCGTGA

Protein sequence :
MNLQHERIDGLCSQLKLDRIASDWGALAQHAATTDASLADFLEQLLQAELGAREERKRQTLTKLASLPGIKTLEQYDFGF
ASGAPRAQIQELASLAFIERAENVVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQNRLREFFNRA
VIGPRLLVIDEIGYLPFGREEADLFFNVVAKRYERGAIVLTSNLPFTQWATAFADDQTLTAAMLDRLLHHAHIVQITGES
YRLKDKRKAGQTSTRASMKAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 1e-61 60
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 6e-76 60
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-76 60
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 6e-76 60
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 6e-76 60
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 6e-76 60
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 7e-76 60
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 6e-76 60
unnamed CAA21402.1 - Not tested HPI Protein 7e-76 60
api84 CAF28558.1 putative transposase Not tested YAPI Protein 6e-76 60
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 7e-76 60
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-75 60
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 7e-76 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSPO_c02531 YP_006030361.1 isrso6-transposase orfb protein VFG1460 Protein 8e-62 60
RSPO_c02531 YP_006030361.1 isrso6-transposase orfb protein VFG1663 Protein 1e-76 60
RSPO_c02531 YP_006030361.1 isrso6-transposase orfb protein VFG1627 Protein 3e-76 60
RSPO_c02531 YP_006030361.1 isrso6-transposase orfb protein VFG1606 Protein 3e-76 60
RSPO_c02531 YP_006030361.1 isrso6-transposase orfb protein VFG1515 Protein 3e-76 60