Gene Information

Name : RSPO_c01279 (RSPO_c01279)
Accession : YP_006029116.1
Strain : Ralstonia solanacearum Po82
Genome accession: NC_017574
Putative virulence/resistance : Unknown
Product : ISRSO8-transposase orfB protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1357038 - 1357952 bp
Length : 915 bp
Strand : +
Note : -

DNA sequence : 
GTGAAGGCGTACATCGACCGCTATCGCGATGCGTACGGGGTCGAGCCCATCTGCAAAGTCTTGCAGATTGCCCCGTCTTG
CTATCGGCGCTACGCGGCCCAGCAACGCAACCCGGCGTTGCGCTGCAAACGCGCCCAACGCGACGATGTGCTCATCCCCG
ACATCAAGCGCATCTGGCACGGCAATTGGCAGGTGTATGGCGCCGACAAGGTCTGGAAGCAGATGATCCGCGAGGGCATT
CGTGTCGCCCGTTGCACGGTCGAGCGCTTGATGAAGCGCCAGGGCTTGCAAGGCGTGCGTCGTGGCAAGGTGGTGCGCAC
CACGACGCCTGATACTTCGGCGCCATGCCCGCTGGACCGGGTCCAGCGGATGTTCAAAGCCGAACGGCCCAACCAACTGT
GGGTGTCGGACTTCACCTACGTTTCGACCTGGCAGGGCTGGCTATACGTGGCGTTCGTCATCGACGTGTTCGCACGGCGC
ATTGTGGGCTGGCGCGTGAGCCGCACCATGCGTAGCGACTTCGTGCTGGACGCCCTGGAGCAGGCTCTGTATGACCGCCA
ACCGGCCAGCTCCGATGCCTTGGTGCACCACTCGGACAGGGGCTCGCAATACCTATCCATTCGCTACACCGAGCGTCTAG
CCGAGGCCGGCATCGAACCCTCGGTCGGCAGCCGTGGCGATAGTTACGACAATGCGCTAGCCGAGACCGTCAACGGGCTG
TACAAAGCCGAGTTGATTCACCGCCGAGCGCCCTGGAAGTCCAGGGAATCCGTGGAACTGGCAACCCTGCAATGGGTGCA
CTGGTTTAACCACATCCGACTGCTTGAGCCCATCGGGTACATCCCGCCGGCTGAAGCTGAGGCAAACTACTGGCGGCAAC
TCGCCAGTCAGACCGCTGAGCCGGTCTCAACTTAA

Protein sequence : 
MKAYIDRYRDAYGVEPICKVLQIAPSCYRRYAAQQRNPALRCKRAQRDDVLIPDIKRIWHGNWQVYGADKVWKQMIREGI
RVARCTVERLMKRQGLQGVRRGKVVRTTTPDTSAPCPLDRVQRMFKAERPNQLWVSDFTYVSTWQGWLYVAFVIDVFARR
IVGWRVSRTMRSDFVLDALEQALYDRQPASSDALVHHSDRGSQYLSIRYTERLAEAGIEPSVGSRGDSYDNALAETVNGL
YKAELIHRRAPWKSRESVELATLQWVHWFNHIRLLEPIGYIPPAEAEANYWRQLASQTAEPVST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-66 64
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-58 63
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-58 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-75 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-74 61
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-76 61
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-76 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-76 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 9e-77 61
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-77 60
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-78 60
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-78 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-77 59
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-77 59
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-77 59
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-78 59
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 8e-75 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 8e-75 59
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 8e-75 59
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-55 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-74 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-53 45
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 9e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSPO_c01279 YP_006029116.1 ISRSO8-transposase orfB protein VFG1602 Protein 2e-74 58