Gene Information

Name : SerAS13_0848 (SerAS13_0848)
Accession : YP_006023724.1
Strain : Serratia sp. AS13
Genome accession: NC_017573
Putative virulence/resistance : Virulence
Product : major facilitator superfamily protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 949117 - 950340 bp
Length : 1224 bp
Strand : +
Note : PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0923 major facilitator transporter

DNA sequence :
ATGAGTATTTCACCTCCCGCTAAATCACTCGCATCTGGGAATACGTCTCCTTCAAACTGGCCGTTGGCGCTGTGCGCCGG
TCTGTTGGGCATCGGGCAAAACGGCCTGCTGGTGGCGTTGCCGGTGCTGGTCGGCATGACCCACTTGTCGCTTTCCGTCT
GGGCCGGGCTATTGACGCTTGGCTCAATGCTGTTTCTGGTCGGCTCTCCCTGGTGGGGGCGACAGTCTGAAATTCGCGGC
TGCAAGTTTGTCGTGACGATGGCGCTTGCCGGTTATTTGTTCAGCTTTGCTTTACTGGCGTTGGCCGTTTGGGGGCTGGC
AGCCGGATGGCTTTCACCGATGGTGGGGCTGGGCGGCCTGATCCTAGCGCGCGTTATCTATGGGCTGACGGTGTCCGGCA
TGGTGCCCGCCAGCCAAACCTGGGCATTGCAGCGTGCCGGCTACGAACAGCGCATGTCGGCGCTGGCGACCATCAGCTCC
GGGCTGAGCTGCGGGCGGTTGCTGGGCCCGCTGTGCGCCGCGCTGGCGTTGTCTCTCCATCCGATGGCTCCGCTGTGGCT
GATGGCCATTGCGCCATTAATCGCCTTGCTGGTGGTGTGCCGCCAGCATAACGATCCGCCCTTGCCGCCGGTGGCGCAGC
AGCAAAATCGCCTGCGTCTCACTATGGTGCCTTATCTGCTTTGCGCGCTGTTGCTGGCGGCATCGGTCAGTCTGATGCAG
CTTGGCCTGGCGCCGCATCTGACCCGTTTGTTCAACCACTCTGCCACGACCGTCAGCCACCATGTGGCCGTATTGCTCAG
CGTAGCGGCGGCCTGTACGCTGCTGGCGCAGTTCCTGGTGGTGCGTCCGCAGCGATTCAGCGCGCCGCAATTGCTGTTGA
TTGCGGCGGTATTGATGGTGACGGGATTAGGGTTGATGTGCGCCCAACCGCTGGCGCTGTTCTATCTCGGCTGCGCGCTG
GCTTCCTTCGGTGCGGCGATGGCGACGCCAGGTTATCAGTTGATGCTGAACGATAAATTATCCACCGGCAAAGGCGCCGG
GGCTATCGCCACCAGCCATACGCTGGGCTACGGTCTGAGCGCGTTGATGGTGCCGGTGGTGGCAAGATTTTATGGCGAGT
CACAGCTGATTGCAGCGGCTCTGACGATGGCCGTCCTGCTGGGCGGTATCAGCGGCTGGCTATGGTGCCGGCAGCGTATT
CAGCTACATTCTGCGGGAGAGTAA

Protein sequence :
MSISPPAKSLASGNTSPSNWPLALCAGLLGIGQNGLLVALPVLVGMTHLSLSVWAGLLTLGSMLFLVGSPWWGRQSEIRG
CKFVVTMALAGYLFSFALLALAVWGLAAGWLSPMVGLGGLILARVIYGLTVSGMVPASQTWALQRAGYEQRMSALATISS
GLSCGRLLGPLCAALALSLHPMAPLWLMAIAPLIALLVVCRQHNDPPLPPVAQQQNRLRLTMVPYLLCALLLAASVSLMQ
LGLAPHLTRLFNHSATTVSHHVAVLLSVAAACTLLAQFLVVRPQRFSAPQLLLIAAVLMVTGLGLMCAQPLALFYLGCAL
ASFGAAMATPGYQLMLNDKLSTGKGAGAIATSHTLGYGLSALMVPVVARFYGESQLIAAALTMAVLLGGISGWLWCRQRI
QLHSAGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
imm NP_839224.1 membrane transport protein Not tested SHI-2 Protein 3e-69 60
imm NP_709453.1 membrane transport protein Not tested SHI-2 Protein 3e-69 60
unnamed AAD54670.1 unknown Not tested SHI-2 Protein 4e-69 60
shiF AAD44744.1 ShiF Virulence SHI-2 Protein 2e-69 60
shiF YP_002414047.1 putative membrane transport protein, major facilitator superfamily Not tested Not named Protein 9e-69 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS13_0848 YP_006023724.1 major facilitator superfamily protein VFG0614 Protein 1e-69 60