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Name : SerAS13_0271 (SerAS13_0271) Accession : YP_006023158.1 Strain : Serratia sp. AS13 Genome accession: NC_017573 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : 5.99.1.2 Position : 319099 - 321138 bp Length : 2040 bp Strand : + Note : SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: spe:Spro_0310 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim dom DNA sequence : ATGCAACTCTACTTGTGCGAAAAACCCAGTCAGGGTAAAGATATCGGCGCCATTCTCGGGGCGACGCAGCGAAAGCAGGG TTACCTGGCGGGAGCCGGCGTCATTGTCACCTGGGCTATCGGGCACCTGCTGGAACAGGCCCAGCCGGAGACCTACGGTG AGCAGTTCGGCAGTCCCTGGCGGGAGTCCGTTCTTCCTATTGTCCCTACCCAGTGGAAAATGGCGATAAAAAAAGACACT GCCGATCAGTTCGCTGTCATCCGTGGGTTACTCAAACAGGTTGATTCTGTGGTGATTGCGACCGATGCGGATCGCGAGGG GGAAGTGATCGCGCGGGAATTACTAGAGCATTGCCACTTTACCGGCCCGGTCCAGCGGCTCTGGTTGTCAGCGCTGGACG AGGCCAGTATTCGGCATGCCCTGGCGAACAAACTCCCTGGTGAGAAGACCGCGCCCCTGTATGAAGCTGGCCTGGCGCGA TCACGGGCTGACTGGATGACGGGGATGAACCTGACCCGGCTTTACACGCTCAAAGCCCGCGAGCAGGGATACGGCGAAGT GTTGTCGATCGGGCGGGTGCAGACCCCCACGCTGGCGCTGGTCGTGAACCGTGACCGCGATATTGCCAACTTCATCTCAA AACCATACTGGCAAGTCAGGGGCACGCTGCAGAAAGGTGGGATCGCCTTCCCGGCAAACTGGGTACCTGCGGCCAACTAC TGTGATGAAGAGAAGCGCTGTATTCAACAGAATGTGGCGCAGGCCGTCGTGCAGCGGTGTCAGCAAACGGCTCATGCCGT TGTGCTTGAGGTGGGGACCGAGCGCAAGAAAGAGTCCGCGCCGTTGGCATTTGATCTGGGCACCCTGCAGCAGGCTTGCT CCCGCAAGTGGGGGATGAGCGCCAACCAGGTCTTGAGTATCGCACAGTCACTGTATGAGACGCACAAGGCCACCACATAT CCCCGGACGGATTGCGGCTATCTGCCGACATCGATGCGGGAAGAGGTTGCCGATGTGCTGAGCGCTGTTACCCGCACGGA CCCAACGCTCAACGAAAGCGTGGCCAGGCTCGACAGGGCTTTTGTTTCCCGTATCTGGAATGACAAAAAAATTACGGCGC ACCACGGGATTATCCCAACCAAACAGCCGTTCGACCTGAGCAAGTTGTCAGCCGATGAGCTCAAGGTCTATCAGCTGATC CGTCAGCATTACCTGGCACAGTTCCTGCCCTTACATGAAGTAGATGTGACGGAAGCCACCTTCAATATCGGCGGGCAACT GTTCCGCACTCGCGGCAAGGTCGAGGCTGTTGCTGGATGGAAAGTGTTGTTCCAGCATGACGTGAGCGAGGCGAAAGAGG AACCGGCTGACACGGATGATGTCCGGCTGCCGGCGCTGGTTAAAGGGGAAACCGTCGCGGTAGCCGGCGCTGAGCTCAAA ACGTTGCAGACGAAGCCCCCAGGACATTTCACCGACGGGACACTGATCGCCGCCATGAAAAATGCAGCGGCGTTCGTCAG TGACCCGCAACTGAAGAAAGTGTTGAAAGAGAACGCAGGGCTGGGTACTGAAGCGACGCGCGCCGGTATCCTGGAGACGC TGTTTAAACGCGGGTACCTGGAGAAGAAGGGTAAATACCTACTCTCCACACCGATCGCCGGCGAACTGATTGATGCGTTA CCGACTGCGCTGACCAACCCCGGGATGACGGCGCTGTGGGAGCAGGCGCTGGACGAGATTGCCCAGGGCCAGATGACACT CGATACGTTCATGAGCCGCCAGGCACAGTGGACAGGGCATCTGGTGGAGAAAGGGAAGACGCAGGCTGTGAAGTTTACCG CCCCACCTTCACCGCCGTGCCCGACATGCAGTGGGTCGATGCGCCGGCGTGCCGGCAAGAAAGGCGGTGGTGCTTTCTGG GGCTGCAGTAATTATCCCACTTGCCAGGGGGTCATTAACATCGATGCAAAAGGTGGGCGCAAGGCTAAGCGCTATAAAGC GAAATCACCGACTAAAAATAAAGCAACAGGATCGGAGTAA Protein sequence : MQLYLCEKPSQGKDIGAILGATQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSPWRESVLPIVPTQWKMAIKKDT ADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHFTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLAR SRADWMTGMNLTRLYTLKAREQGYGEVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIAFPANWVPAANY CDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRKWGMSANQVLSIAQSLYETHKATTY PRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVARLDRAFVSRIWNDKKITAHHGIIPTKQPFDLSKLSADELKVYQLI RQHYLAQFLPLHEVDVTEATFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVAVAGAELK TLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGYLEKKGKYLLSTPIAGELIDAL PTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTGHLVEKGKTQAVKFTAPPSPPCPTCSGSMRRRAGKKGGGAFW GCSNYPTCQGVINIDAKGGRKAKRYKAKSPTKNKATGSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 65 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 0.0 | 65 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 65 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 58 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 1e-164 | 54 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 6e-166 | 52 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 6e-157 | 51 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 6e-155 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-122 | 43 |
