Gene Information

Name : SerAS13_1131 (SerAS13_1131)
Accession : YP_006023995.1
Strain : Serratia sp. AS13
Genome accession: NC_017573
Putative virulence/resistance : Virulence
Product : two component Fis family sigma54-specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1235484 - 1236821 bp
Length : 1338 bp
Strand : -
Note : KEGG: dac:Daci_2057 fis family two component sigma-54-specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction re

DNA sequence : 
ATGGCCTGTGTGTTGATTGTTGATGACGATGGCGCTTTCCGTGCCAGCCTGGCTGAAGCCGTGACCGATTTGCATCATCA
CGCGATAGAGGCGGACGGTACATTGGCCGGACTGGAACAGCTTCGCGCAGGTCATGTCGCTGTCGCTATTGTGGATTTAC
GCATGCCGGGTGATGACGGACTGGTCTTCCTGCGTCAGGCCCGCAGGCTCGCACCCGGCGTGCCCTGCATTATGTTAACG
GCGCATGCCAGCGGGGGTAATACCATTGAGGCAATGCGGATGGGTGCCTTTGATCACCTGACGAAACCCATTGGCCGGGC
TGCGCTGCAAGAGGTGCTAATGCGTGCCCTGAGGCAGAGCGAGGAAGATCAGAGCGCGTCAAAACCGTCTGCCGAGAGGC
CATCCCCTGACGATGATCTGGTCGGGAGTAGCGAGGCCATGCGACAGGTTTTTAAACGTATTGGCCAGGTGGCAAACAGT
GATGTCACCGTACTGGTTATGGGGGAGACAGGAACAGGGAAAGAATTGGTGGCCCGCGAGCTACATCGTAACAGTTCGTA
CTCCACCGGGCCTTTCATCGCGGTAAATTGCTCGGCAATCCCGACGGATCTGATAGAAAGCGAATTGTTTGGGCATGTAA
AGGGGGCGTTTTCCGGTGCCATATCGGATCGTATTGGGCGATTCCGAGAGGCTGAGGGGGGTACCCTGTTTTTGGATGAA
ATCGGTGATATGCCGTTGCCGACACAAGCGAAAATTTTACGAACATTGCAGGAGCGAGAGGTCACTCCCGTCGGGGGAGC
TCGCACTTATCCGGTGAAGGTGCGCATCGTTGCCGCTACGCATCATGATCTGCCTTTGGCGGTGCGGGAAGGCAGTTTCC
GTGAAGATTTATGGTATCGGCTACAGGTCATCACCATTACGTTGCCCCCGCTGCGTGAACGCCTGGGAGACGTGATTTTA
CTGGCGGAACATTTTTTACGACGTTCGGGGGGCGATACACCCAAACGTCTTTCCCATCAGGCCGCTCAGGTGTTGCTGGC
GCATCTGTGGCCGGGGAACGTGCGTGAGTTGCAGAATGCCATAAAAAGGGCATCAGTGCTCAGTCAGGGTTCGATTATTG
ACCCTAACCAACTGGGGTTGTGTGCCTCTCCGGTAGAGAGCCCGGGACCGGTGCTGAACTGGGATGGTACGCTGGAAGAG
ACCATGGCGGCCATTGAGCGGGAGATGATTATGCGGGCATTGGCGGCAACCGGAGACAACCGGGCTCAAGCGGCCCGTCG
GCTTGGCCTTTCGCGTCAGCAGCTTTATCGTAGGCTTGAACATTTTGGCATTAAATAG

Protein sequence : 
MACVLIVDDDGAFRASLAEAVTDLHHHAIEADGTLAGLEQLRAGHVAVAIVDLRMPGDDGLVFLRQARRLAPGVPCIMLT
AHASGGNTIEAMRMGAFDHLTKPIGRAALQEVLMRALRQSEEDQSASKPSAERPSPDDDLVGSSEAMRQVFKRIGQVANS
DVTVLVMGETGTGKELVARELHRNSSYSTGPFIAVNCSAIPTDLIESELFGHVKGAFSGAISDRIGRFREAEGGTLFLDE
IGDMPLPTQAKILRTLQEREVTPVGGARTYPVKVRIVAATHHDLPLAVREGSFREDLWYRLQVITITLPPLRERLGDVIL
LAEHFLRRSGGDTPKRLSHQAAQVLLAHLWPGNVRELQNAIKRASVLSQGSIIDPNQLGLCASPVESPGPVLNWDGTLEE
TMAAIEREMIMRALAATGDNRAQAARRLGLSRQQLYRRLEHFGIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 5e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS13_1131 YP_006023995.1 two component Fis family sigma54-specific transcriptional regulator BAC0467 Protein 7e-77 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS13_1131 YP_006023995.1 two component Fis family sigma54-specific transcriptional regulator VFG1214 Protein 1e-73 42