Gene Information

Name : SerAS13_1111 (SerAS13_1111)
Accession : YP_006023980.1
Strain : Serratia sp. AS13
Genome accession: NC_017573
Putative virulence/resistance : Virulence
Product : fimbrial biogenesis outer membrane usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1218013 - 1220616 bp
Length : 2604 bp
Strand : +
Note : KEGG: ecp:ECP_0296 fimbrial usher protein; region: usher; pfam00577; manually curated; PFAM: Fimbrial biogenesis outer membrane usher protein

DNA sequence :
TTGTTTCATTCCAAAAAAATCCGGCACGCCCGTATATTGCATAAAAAGAGAGTAACGGCTCGCATTATCTCATTAGCCTA
TTTTATTGGTATGAGCATATCTGCCGCGCGTGCAGAATTATATTTTAATCCACGTTTTTTGTCTGACGATCCGGACGTCG
TTGCTGATTTATCTGCATTTTCACGTGGTCAAGAGATCCCACCCGGCACATATCGGGTAGATGTTTATATGAACGACGTA
TACATCTCAACCCAGGATATTGAATTTCAGCCGTCAAAGGAAGGGAAACTCATGCCGTGCCTTACCCCCACCCAAATTGA
ATCGATGGGGGTAAACAAGTATTCAGTTCCGGGAATGGATAAGCTGGAGCCTGATGTATGCATGTTGCTGACCTCGATGA
TAAACGGTTCAACATATAATTTTGATGTTGGCCTACAGAGATTAAATATAACGGTCCCTCAGGTATTTATGTCGAATAAG
GCCCGGGGATATATCGCGCCGGAATTCTGGGACAATGGCATAACAGCGGCCATGATTAATTATGATTTTAACGGGAGTCG
TTCCCGTAATGGTCATATAGGTAGCGGTGAGAGTGCTTATCTTAGCCTGCAAAGCGGCTTTAATATTGGTGCCTGGCGTC
TTCGCGATAACAGAAACTGGAGTTACAACAATGGACGGGCAGGAACCCAAAGCCGATGGCAGCATGTCAACTCTTATATA
GAAAGAGATGTCATTCCGCTCCGTTCCCACTTGACTGTGGGAGATAGTTACACGTCAGGTGATATTTTTGATGGTTTCAA
TTTTAGAGGGATCAAGCTGGAGTCAAACCTGAATATGCTTCCTGACAGCCAACGAGGATTTGCGCCAACAATACGCGGTA
TTGCGCGAGGCACTGCGCAGGTGAGCATAAAACAGAACGGATATGAAATCTATCAAACCACTGTACCGCCAGGGCCGTTT
GTCATCAGTGACCTCTATCCGGCAAGCAGCGGCGGTGATTTACAGGTTATGGTAAAAGAAACTGACGGAAGTATTCAGCA
ATTTAGTGTTCCGTGGGCATCGGTACCTCTTCTGCAGCGCGAGGGGCAGGCAAAGTATTCCCTCAATGCAGGCGAATTCC
GAAGTGGCAATACTCAACTGGACACACCCGGTTTTGCTCAGGGGACGCTTAGCTACGGTTTTCCTGACGGTTGGACAGCC
TATGGCGGTCTGCATTTAGCGGAGCGTTATCGGGCTTTTAACCTGGGCGTCGCTAAAAATATGGGACGAATGGGGGCAAT
GTCTCTGGATGCCACTCAGGCTAATGCCGTATTGCCTGATGATAGCCATAATAATGGTCAGTCCTACCGTTTTCTTTACA
ACAAAGCACTACCAGAAACGGGGACCAGTGTACAGTTGATCGGATATCGGTACTCTACGCAAGGATATTTCAATTTTTCT
GATACCGCACATCAGAAAATGAGTGGTTATAGTGTCGCCACCCAGGACGGGGACATCCAGATCCGTCCCAAATACACTGA
CTATTATAACCTTGCTTATAAAAAGCGTGGCCGATTACAACTCAGCATCAGTCAACAGGCGGGGGCATCATCAACACTAT
ATTTAAGTGGCAGTCATCAAACATACTGGGGATCGAAGAAAACTGATCGTCAATTGAACGCCGGATTCAATTCTTCGGTA
GGTAATATCAACTGGTCCCTGAATTACAGTCTAACGAAGAACGCCTGGCAGGACGGAACTGACAGAATGTTATCGTTTGA
TGTGAATATTCCATTCAGTCGATGGATGCGCTCAGACAATACATCCGAATGGAGGACAGCAAATGCCCGTTTCAGCCAGT
CATGGCAGCAAGACGGGCAGGCAACCAGTATGGCCGGACTGTACGGAACATTACTCCCGGATAATAACCTGGGATACAGT
GTCCAAAGTGGATATACCCATAATGGGTACCAAGACAGTCATCAGACAGGCTATGCCTCGATGAATTATCGTGGAGGATA
TGGCAATGTGAATGTCGGGTACAGTCATGGAAGCGATTTTAAGCAATTCCATTATGGCCTGAGTGGTGGGCTCCTTGCTC
ATGCTAATGGCGTGACACTGAGCCAACCGATGGGGGATACAATGATCCTCGTAAAAGCGCCGGGAGCTGCTAACACTCGA
ATAGAAAACCAGACCGGTATATCAACAGACTGGAGAGGGTATTCTGTCGTGCCTTATGCAATAGATTATCGTGAAAATCG
GGTTGCTCTGGATACAAATACACTGGCTCCAAATGTAGATATTGAAAACTCGGTGGTTACCGTTGTGCCTACACGCGGCG
CTGTTGTCAGGGCAGATTACAAGACCCGCGTAGGTGTGAAAGTCTTGATGACGCTGAAAAGGAATGGAAAACCCGTTCCG
TTTGGCGCTGTTGTCGCAACAGAAAACTCAGGGGGGAGTATTGTCGGAGACAATGGGCAGGTTTATCTGAGTGGAATGCC
ACTATCCGGAAAAGTCAACGTAAAATGGGGCAACGGGCTTAAAGATCAGTGCCATGCCAGTTATAAACTGCCTAAAAGTA
GTCAAAAAGAGATATTAAGCAACATTACGGTTAATTGCAGGTGA

Protein sequence :
MFHSKKIRHARILHKKRVTARIISLAYFIGMSISAARAELYFNPRFLSDDPDVVADLSAFSRGQEIPPGTYRVDVYMNDV
YISTQDIEFQPSKEGKLMPCLTPTQIESMGVNKYSVPGMDKLEPDVCMLLTSMINGSTYNFDVGLQRLNITVPQVFMSNK
ARGYIAPEFWDNGITAAMINYDFNGSRSRNGHIGSGESAYLSLQSGFNIGAWRLRDNRNWSYNNGRAGTQSRWQHVNSYI
ERDVIPLRSHLTVGDSYTSGDIFDGFNFRGIKLESNLNMLPDSQRGFAPTIRGIARGTAQVSIKQNGYEIYQTTVPPGPF
VISDLYPASSGGDLQVMVKETDGSIQQFSVPWASVPLLQREGQAKYSLNAGEFRSGNTQLDTPGFAQGTLSYGFPDGWTA
YGGLHLAERYRAFNLGVAKNMGRMGAMSLDATQANAVLPDDSHNNGQSYRFLYNKALPETGTSVQLIGYRYSTQGYFNFS
DTAHQKMSGYSVATQDGDIQIRPKYTDYYNLAYKKRGRLQLSISQQAGASSTLYLSGSHQTYWGSKKTDRQLNAGFNSSV
GNINWSLNYSLTKNAWQDGTDRMLSFDVNIPFSRWMRSDNTSEWRTANARFSQSWQQDGQATSMAGLYGTLLPDNNLGYS
VQSGYTHNGYQDSHQTGYASMNYRGGYGNVNVGYSHGSDFKQFHYGLSGGLLAHANGVTLSQPMGDTMILVKAPGAANTR
IENQTGISTDWRGYSVVPYAIDYRENRVALDTNTLAPNVDIENSVVTVVPTRGAVVRADYKTRVGVKVLMTLKRNGKPVP
FGAVVATENSGGSIVGDNGQVYLSGMPLSGKVNVKWGNGLKDQCHASYKLPKSSQKEILSNITVNCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 71
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS13_1111 YP_006023980.1 fimbrial biogenesis outer membrane usher protein VFG1645 Protein 0.0 71
SerAS13_1111 YP_006023980.1 fimbrial biogenesis outer membrane usher protein VFG0912 Protein 0.0 71
SerAS13_1111 YP_006023980.1 fimbrial biogenesis outer membrane usher protein VFG0876 Protein 0.0 62
SerAS13_1111 YP_006023980.1 fimbrial biogenesis outer membrane usher protein VFG0446 Protein 2e-172 47
SerAS13_1111 YP_006023980.1 fimbrial biogenesis outer membrane usher protein VFG0454 Protein 3e-152 41